Variant report

Variant	rs17034281
Chromosome Location	chr12:104049941-104049942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1032450	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10861059	0.91[JPT][hapmap]
rs11111689	0.87[CHD][hapmap];0.93[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs11111696	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11111703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821299	0.87[CHD][hapmap];0.93[JPT][hapmap];0.80[MEX][hapmap]
rs55742910	0.84[AMR][1000 genomes]
rs61937794	0.81[EUR][1000 genomes]
rs703631	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs831425	0.84[ASW][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs831426	0.86[GIH][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.86[AFR][1000 genomes]
rs831681	1.00[YRI][hapmap];0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104033200-104062200	Weak transcription	Spleen	Spleen
2	chr12:104044400-104051200	Weak transcription	HSMMtube	muscle
3	chr12:104047000-104059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:104047200-104051400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:104047600-104051200	Weak transcription	HSMM	muscle
6	chr12:104049400-104051600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr12:104049600-104051200	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links