Variant report

Variant	rs831426
Chromosome Location	chr12:104052124-104052125
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1032450	0.86[AFR][1000 genomes]
rs11111703	0.86[AFR][1000 genomes]
rs17034281	0.86[GIH][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.86[AFR][1000 genomes]
rs703631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs831425	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs831432	0.86[ASN][1000 genomes]
rs831433	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs831681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104033200-104062200	Weak transcription	Spleen	Spleen
2	chr12:104047000-104059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:104051000-104052400	Enhancers	Primary T cells from cord blood	blood
4	chr12:104051200-104052200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr12:104051200-104052200	Enhancers	Rectal Smooth Muscle	rectum
6	chr12:104051200-104052600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr12:104051200-104053200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr12:104051400-104052200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:104051400-104052600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr12:104051600-104052200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr12:104051600-104052200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr12:104051600-104052200	Bivalent Enhancer	A549	lung
13	chr12:104051800-104052200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
14	chr12:104052000-104052600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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