Variant report

Variant	rs1033825
Chromosome Location	chr6:82445375-82445376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10484871	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13197254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212881	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220502	0.88[EUR][1000 genomes]
rs16893407	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194941	0.82[AFR][1000 genomes]
rs2295984	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2323515	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3186631	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34138673	0.85[CEU][hapmap]
rs34409317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736841	0.86[EUR][1000 genomes]
rs67841418	0.92[EUR][1000 genomes]
rs67880674	0.92[EUR][1000 genomes]
rs72899455	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72899456	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745467	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9449363	0.84[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82422800-82451800	Weak transcription	Aorta	Aorta
2	chr6:82437800-82459400	Weak transcription	Pancreas	Pancrea
3	chr6:82442000-82445400	Weak transcription	NHDF-Ad	bronchial
4	chr6:82442000-82449600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:82442000-82455000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:82442000-82456200	Weak transcription	Small Intestine	intestine
7	chr6:82442600-82454400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:82442800-82447600	Weak transcription	Right Ventricle	heart
9	chr6:82443200-82449600	Weak transcription	Left Ventricle	heart
10	chr6:82444200-82445400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:82444600-82446200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:82444600-82446200	Enhancers	HMEC	breast
13	chr6:82444800-82446400	Enhancers	Placenta	Placenta
14	chr6:82444800-82455600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:82445000-82445400	Weak transcription	NHEK	skin
16	chr6:82445200-82445800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:82445200-82446000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:82445200-82446200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr6:82445200-82446200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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