Variant report

Variant	rs2295984
Chromosome Location	chr6:82446050-82446051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82442487..82447325-chr6:82460557..82464499,4	MCF-7	breast:
2	chr6:82444036..82446124-chr6:82461824..82463770,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IBTK-2	chr6:82445967-82446070	ENSG00000232031.1
2	lnc-IBTK-2	chr6:82445967-82446212	NONHSAT113745

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1033825	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10484871	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197254	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13212881	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13220502	0.88[EUR][1000 genomes]
rs16893407	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2323515	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3186631	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34138673	0.85[CEU][hapmap]
rs34409317	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3736841	0.86[EUR][1000 genomes]
rs67841418	0.92[EUR][1000 genomes]
rs67880674	0.92[EUR][1000 genomes]
rs72899455	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72899456	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7745467	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449363	0.84[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82422800-82451800	Weak transcription	Aorta	Aorta
2	chr6:82437800-82459400	Weak transcription	Pancreas	Pancrea
3	chr6:82442000-82449600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:82442000-82455000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:82442000-82456200	Weak transcription	Small Intestine	intestine
6	chr6:82442600-82454400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:82442800-82447600	Weak transcription	Right Ventricle	heart
8	chr6:82443200-82449600	Weak transcription	Left Ventricle	heart
9	chr6:82444600-82446200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:82444600-82446200	Enhancers	HMEC	breast
11	chr6:82444800-82446400	Enhancers	Placenta	Placenta
12	chr6:82444800-82455600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:82445200-82446200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:82445200-82446200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:82445400-82446200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:82445600-82447000	Enhancers	Hela-S3	cervix
17	chr6:82445800-82446200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:82445800-82456400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:82446000-82446400	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr6:82446000-82454400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:82446000-82455000	Weak transcription	Liver	Liver
22	chr6:82446000-82455400	Weak transcription	NHDF-Ad	bronchial
23	chr6:82446000-82459600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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