Variant report

Variant	rs7745467
Chromosome Location	chr6:82455072-82455073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82453354..82455433-chr6:82673037..82675141,2	MCF-7	breast:
2	chr6:82449873..82453287-chr6:82454959..82457628,4	K562	blood:
3	chr6:82451873..82455312-chr6:82456113..82458454,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1033825	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10484871	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197254	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13212881	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13220502	0.88[EUR][1000 genomes]
rs16893407	1.00[CEU][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2295984	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323515	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3186631	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34138673	0.85[CEU][hapmap]
rs34409317	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3736841	0.86[EUR][1000 genomes]
rs67841418	0.92[EUR][1000 genomes]
rs67880674	0.92[EUR][1000 genomes]
rs72899455	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72899456	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9449363	0.84[EUR][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82437800-82459400	Weak transcription	Pancreas	Pancrea
2	chr6:82442000-82456200	Weak transcription	Small Intestine	intestine
3	chr6:82444800-82455600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:82445800-82456400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:82446000-82455400	Weak transcription	NHDF-Ad	bronchial
6	chr6:82446000-82459600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:82447000-82455200	Weak transcription	Hela-S3	cervix
8	chr6:82448400-82456200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:82449400-82456200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:82449600-82458800	Weak transcription	Fetal Lung	lung
11	chr6:82450600-82455600	Weak transcription	Ovary	ovary
12	chr6:82451200-82457800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:82451800-82457000	Weak transcription	Stomach Mucosa	stomach
14	chr6:82452000-82455200	Weak transcription	HSMM	muscle
15	chr6:82452800-82455200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:82453400-82455400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:82453400-82455600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:82453400-82455600	Weak transcription	NHLF	lung
19	chr6:82453400-82457000	Enhancers	Fetal Heart	heart
20	chr6:82453600-82455200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:82453600-82455200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:82453600-82455200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:82453600-82455400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:82453600-82455800	Weak transcription	NH-A	brain
25	chr6:82453800-82455200	Enhancers	Aorta	Aorta
26	chr6:82453800-82455200	Weak transcription	Osteobl	bone
27	chr6:82453800-82455600	Enhancers	Primary hematopoietic stem cells	blood
28	chr6:82453800-82455600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:82453800-82457000	Weak transcription	HepG2	liver
30	chr6:82453800-82460000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:82454000-82458600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:82454000-82459400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:82454000-82459400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:82454000-82459400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:82454200-82455400	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:82454200-82455600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:82454200-82459000	Weak transcription	Colonic Mucosa	Colon
38	chr6:82454400-82455200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:82454400-82456800	Weak transcription	Fetal Intestine Small	intestine
40	chr6:82454600-82455200	Enhancers	Placenta	Placenta
41	chr6:82454600-82456000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:82454600-82456000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:82454600-82456400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:82454800-82455200	Weak transcription	Fetal Intestine Large	intestine
45	chr6:82454800-82455600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:82454800-82456200	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:82454800-82456200	Genic enhancers	Left Ventricle	heart
48	chr6:82454800-82456400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:82454800-82457000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:82454800-82457000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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