Variant report

Variant	rs16893407
Chromosome Location	chr6:82452566-82452567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82451873..82455312-chr6:82456113..82458454,3	MCF-7	breast:
2	chr6:82449873..82453287-chr6:82454959..82457628,4	K562	blood:
3	chr6:82450819..82454484-chr6:82461443..82464031,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1033825	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484871	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13197254	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212881	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220502	0.90[EUR][1000 genomes]
rs2295984	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2323515	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3186631	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34138673	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs34409317	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736841	0.88[EUR][1000 genomes]
rs67841418	0.94[EUR][1000 genomes]
rs67880674	0.94[EUR][1000 genomes]
rs72899455	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72899456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745467	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9449363	0.86[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82437800-82459400	Weak transcription	Pancreas	Pancrea
2	chr6:82442000-82455000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:82442000-82456200	Weak transcription	Small Intestine	intestine
4	chr6:82442600-82454400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:82444800-82455600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:82445800-82456400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:82446000-82454400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:82446000-82455000	Weak transcription	Liver	Liver
9	chr6:82446000-82455400	Weak transcription	NHDF-Ad	bronchial
10	chr6:82446000-82459600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:82446200-82453600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:82446200-82453600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:82446200-82454800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:82446400-82455000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:82447000-82455200	Weak transcription	Hela-S3	cervix
16	chr6:82448400-82455000	Weak transcription	Right Ventricle	heart
17	chr6:82448400-82456200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:82449400-82456200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:82449600-82458800	Weak transcription	Fetal Lung	lung
20	chr6:82449800-82454800	Weak transcription	Left Ventricle	heart
21	chr6:82450200-82453600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:82450600-82455600	Weak transcription	Ovary	ovary
23	chr6:82451200-82457800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:82451800-82457000	Weak transcription	Stomach Mucosa	stomach
25	chr6:82452000-82455200	Weak transcription	HSMM	muscle
26	chr6:82452200-82453400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:82452200-82453800	Weak transcription	Aorta	Aorta
28	chr6:82452200-82454000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:82452200-82454600	Weak transcription	Placenta	Placenta
30	chr6:82452400-82455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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