Variant report

Variant	rs1035796
Chromosome Location	chr10:90051697-90051698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1035797	0.83[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1048956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10749570	0.87[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10887796	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1426615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1426616	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1946391	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4934390	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4934391	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4934392	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7069968	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097903	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1035796	IFIT3	cis	parietal	SCAN
rs1035796	WAPAL	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
2	chr10:90049000-90056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90049400-90053000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:90049400-90053000	Weak transcription	NHDF-Ad	bronchial
5	chr10:90049600-90051800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:90049800-90053000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:90050400-90052600	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:90050800-90053200	Enhancers	Dnd41	blood
9	chr10:90051000-90052600	Enhancers	Fetal Thymus	thymus
10	chr10:90051000-90052600	Enhancers	Thymus	Thymus
11	chr10:90051000-90053200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:90051200-90051800	Enhancers	Pancreas	Pancrea
13	chr10:90051200-90051800	Enhancers	HSMM	muscle
14	chr10:90051200-90052600	Enhancers	Primary B cells from cord blood	blood
15	chr10:90051200-90052600	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:90051200-90052600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:90051200-90052600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:90051200-90054000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:90051600-90051800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:90051600-90052400	Enhancers	Osteobl	bone
21	chr10:90051600-90053200	Enhancers	GM12878-XiMat	blood
22	chr10:90051600-90055200	Enhancers	Muscle Satellite Cultured Cells	--

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