Variant report

Variant	rs1426616
Chromosome Location	chr10:90049801-90049802
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620307..89622864-chr10:90048277..90050868,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1035796	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1035797	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1048956	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10749570	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10887796	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1426615	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1946391	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4934390	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4934391	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4934392	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs606424	0.81[EUR][1000 genomes]
rs7069968	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097903	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042800-90051200	Weak transcription	HSMM	muscle
2	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
3	chr10:90043000-90051200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:90043000-90051200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:90048200-90050600	Enhancers	GM12878-XiMat	blood
6	chr10:90048800-90051200	Weak transcription	Pancreas	Pancrea
7	chr10:90049000-90050800	Weak transcription	Dnd41	blood
8	chr10:90049000-90056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:90049200-90051000	Weak transcription	Fetal Thymus	thymus
10	chr10:90049200-90051200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:90049400-90051000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:90049400-90051000	Weak transcription	Thymus	Thymus
13	chr10:90049400-90051200	Weak transcription	Primary B cells from cord blood	blood
14	chr10:90049400-90053000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:90049400-90053000	Weak transcription	NHDF-Ad	bronchial
16	chr10:90049600-90050400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:90049600-90051600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:90049600-90051600	Weak transcription	Osteobl	bone
19	chr10:90049600-90051800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:90049800-90053000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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