Variant report

Variant	rs1946391
Chromosome Location	chr10:90042906-90042907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1035796	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1035797	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1048956	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10749570	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10887796	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1426615	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1426616	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4934390	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4934391	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4934392	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs606424	0.80[EUR][1000 genomes]
rs7069968	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7097903	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90037800-90043200	Enhancers	Dnd41	blood
2	chr10:90038800-90043000	Enhancers	Fetal Thymus	thymus
3	chr10:90039000-90043000	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:90039800-90043000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:90039800-90043000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:90041200-90043200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:90041400-90043000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:90041600-90043000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:90041600-90043000	Enhancers	Fetal Lung	lung
10	chr10:90042000-90043000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:90042200-90043000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:90042200-90043000	Enhancers	Adipose Nuclei	Adipose
13	chr10:90042200-90043800	Weak transcription	GM12878-XiMat	blood
14	chr10:90042200-90048400	Weak transcription	Pancreas	Pancrea
15	chr10:90042400-90043000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:90042400-90043000	Enhancers	Fetal Muscle Leg	muscle
17	chr10:90042400-90043000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:90042400-90043000	Enhancers	Right Atrium	heart
19	chr10:90042400-90043000	Enhancers	NH-A	brain
20	chr10:90042400-90043200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr10:90042400-90043200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:90042600-90043000	Enhancers	A549	lung
23	chr10:90042600-90043000	Enhancers	HSMMtube	muscle
24	chr10:90042600-90044000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:90042800-90043000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:90042800-90043000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:90042800-90043000	Enhancers	NHDF-Ad	bronchial
28	chr10:90042800-90043200	Enhancers	Osteobl	bone
29	chr10:90042800-90043800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:90042800-90044000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:90042800-90044000	Weak transcription	Ovary	ovary
32	chr10:90042800-90048400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:90042800-90048600	Weak transcription	Thymus	Thymus
34	chr10:90042800-90051200	Weak transcription	HSMM	muscle
35	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas

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