Variant report

Variant	rs7069968
Chromosome Location	chr10:90043824-90043825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1035796	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1035797	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1048956	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10749570	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10887796	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1426615	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1426616	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1946391	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4934390	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4934391	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4934392	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs606424	0.80[EUR][1000 genomes]
rs7097903	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042200-90048400	Weak transcription	Pancreas	Pancrea
2	chr10:90042600-90044000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:90042800-90044000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:90042800-90044000	Weak transcription	Ovary	ovary
5	chr10:90042800-90048400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:90042800-90048600	Weak transcription	Thymus	Thymus
7	chr10:90042800-90051200	Weak transcription	HSMM	muscle
8	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
9	chr10:90043000-90044200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:90043000-90044200	Weak transcription	HSMMtube	muscle
11	chr10:90043000-90048200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:90043000-90048400	Weak transcription	Fetal Thymus	thymus
13	chr10:90043000-90048400	Weak transcription	NHDF-Ad	bronchial
14	chr10:90043000-90048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:90043000-90048600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:90043000-90051200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:90043000-90051200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:90043200-90048000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:90043200-90048400	Weak transcription	Dnd41	blood
20	chr10:90043200-90049000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:90043800-90044200	Enhancers	GM12878-XiMat	blood
22	chr10:90043800-90044400	Enhancers	Primary B cells from peripheral blood	blood

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