Variant report

Variant	rs10401215
Chromosome Location	chr19:28289228-28289229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:28288750-28289303	SK-N-MC	brain:	n/a	n/a
2	POLR2A	chr19:28288990-28289322	K562	blood:	n/a	n/a
3	POLR2A	chr19:28289149-28289399	ECC-1	luminal epithelium:	n/a	n/a
4	POLR2A	chr19:28288984-28289458	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr19:28289146-28289934	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:28280515..28282081-chr19:28287912..28289650,2	K562	blood:
2	chr19:28282788..28284877-chr19:28288891..28291817,5	K562	blood:
3	chr19:28287926..28289953-chr19:28290054..28291819,2	MCF-7	breast:
4	chr19:28287974..28289871-chr19:28291116..28294809,3	K562	blood:
5	chr19:28278477..28280122-chr19:28288066..28290978,2	K562	blood:
6	chr19:28287010..28289438-chr19:28291370..28293804,2	MCF-7	breast:
7	chr19:28284801..28287477-chr19:28288304..28291575,5	K562	blood:
8	chr19:28285085..28286668-chr19:28288748..28291575,2	K562	blood:
9	chr19:28288124..28289871-chr19:28292370..28294809,2	K562	blood:

No data

Variant related genes	Relation type
LINC00662	TF binding region
ENSG00000267575	Chromatin interaction
ENSG00000267264	Chromatin interaction
ENSG00000261824	Chromatin interaction
ENSG00000272635	Chromatin interaction

Extended variants
information (count: 173 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1015787	0.85[AFR][1000 genomes]
rs10402379	0.85[AFR][1000 genomes]
rs10402862	1.00[CHB][hapmap]
rs10405183	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs10406722	0.82[ASN][1000 genomes]
rs10411325	0.82[ASN][1000 genomes]
rs10414194	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs10417790	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10419578	0.85[AFR][1000 genomes]
rs10420507	0.82[ASN][1000 genomes]
rs10422399	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[YRI][hapmap]
rs10423408	0.82[ASN][1000 genomes]
rs10426115	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1073627	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1080794	0.85[AFR][1000 genomes]
rs1080795	0.85[AFR][1000 genomes]
rs11665712	0.82[ASN][1000 genomes]
rs11666844	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11666865	0.91[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11669594	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11670482	0.82[ASN][1000 genomes]
rs11671577	0.83[CEU][hapmap]
rs11671795	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11671892	0.83[CEU][hapmap]
rs11672030	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11672926	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11673143	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11882825	1.00[CHB][hapmap];0.84[YRI][hapmap]
rs12971524	1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[MKK][hapmap];0.82[ASN][1000 genomes]
rs12980758	0.82[ASN][1000 genomes]
rs1468693	1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs1544602	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1548797	0.85[AFR][1000 genomes]
rs1548799	0.85[AFR][1000 genomes]
rs17620388	0.83[CEU][hapmap]
rs17620537	0.83[CEU][hapmap]
rs17687460	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17687812	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs1966408	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2005862	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2052172	1.00[CHB][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes]
rs2159883	0.85[AFR][1000 genomes]
rs2159885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192126	0.82[ASN][1000 genomes]
rs2192129	0.82[ASN][1000 genomes]
rs2215704	0.82[ASN][1000 genomes]
rs2864805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2902848	1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs29858	0.82[ASN][1000 genomes]
rs3891461	0.83[AFR][1000 genomes]
rs4141058	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4239562	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[YRI][hapmap]
rs4239563	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4239564	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313906	0.85[AFR][1000 genomes]
rs4313907	0.85[AFR][1000 genomes]
rs4452072	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4530273	0.81[AFR][1000 genomes]
rs4638713	0.82[ASN][1000 genomes]
rs4804972	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4805594	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs4805631	0.82[ASN][1000 genomes]
rs4805683	0.82[ASN][1000 genomes]
rs4805686	0.82[ASN][1000 genomes]
rs6510299	1.00[CHB][hapmap];0.93[YRI][hapmap]
rs6510343	0.82[ASN][1000 genomes]
rs6510352	0.82[ASN][1000 genomes]
rs6510397	1.00[CHB][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs6510398	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6510399	0.82[ASN][1000 genomes]
rs717661	0.82[ASN][1000 genomes]
rs7246826	0.85[AFR][1000 genomes]
rs7247064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7247675	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[MEX][hapmap];0.86[YRI][hapmap]
rs7247762	1.00[YRI][hapmap]
rs7248370	1.00[YRI][hapmap]
rs7251981	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7251999	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7252041	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7254201	1.00[CHB][hapmap]
rs7254353	1.00[CHB][hapmap];0.84[CHD][hapmap];0.90[MKK][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs7254721	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[MKK][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs7255769	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7255854	1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7257855	0.82[ASN][1000 genomes]
rs7258333	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7259052	0.83[AFR][1000 genomes]
rs7259514	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7259632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs7260042	0.82[ASN][1000 genomes]
rs73016690	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73024764	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73024769	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73024774	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73026847	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73026853	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73026867	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73026884	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73026890	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73028959	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73028970	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73930106	0.82[ASN][1000 genomes]
rs741081	0.83[CEU][hapmap]
rs7507390	0.82[ASN][1000 genomes]
rs759044	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs759045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8104465	0.82[ASN][1000 genomes]
rs8105586	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs8106234	0.85[AFR][1000 genomes]
rs8107228	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8107238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8108764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8110035	0.83[AFR][1000 genomes]
rs811020	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs811022	0.82[ASN][1000 genomes]
rs811023	0.82[ASN][1000 genomes]
rs811028	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs8112091	0.88[ASN][1000 genomes]
rs9789292	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9789321	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961285	chr19:27731783-28407818	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv1060674	chr19:27747981-28299996	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1065481	chr19:27747981-28413175	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1059366	chr19:27747981-28414634	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1058373	chr19:27747981-28491356	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1061090	chr19:27747981-28682929	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv911510	chr19:27763440-28330908	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv911511	chr19:27763440-28468209	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv911512	chr19:27763440-28484676	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv911513	chr19:27763440-28491875	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv911514	chr19:27763440-28496053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv911523	chr19:27794208-28468209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv911524	chr19:27794208-28484676	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
14	nsv911525	chr19:27794208-28491875	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv911526	chr19:27794208-28496053	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv1063232	chr19:27853206-28569858	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
17	nsv543972	chr19:27853206-28569858	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
18	nsv1055749	chr19:27853206-28740895	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
19	nsv543973	chr19:27853206-28740895	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
20	nsv1067798	chr19:27853207-28431843	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
21	nsv498156	chr19:27853207-28431843	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
22	nsv868982	chr19:27853207-28483508	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
23	nsv930989	chr19:27853207-28569857	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
24	nsv532819	chr19:27853207-28664723	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
25	nsv530474	chr19:27853207-28740894	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
26	nsv916250	chr19:27853209-28483527	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
27	nsv911535	chr19:27861995-28491875	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
28	nsv911536	chr19:27861995-28496053	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
29	esv2762966	chr19:27881186-28539281	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
30	nsv911543	chr19:27893661-28496053	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
31	nsv1062168	chr19:27919584-28460526	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
32	nsv543976	chr19:27919584-28460526	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
33	nsv1058421	chr19:27919584-28491356	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
34	nsv543977	chr19:27919584-28491356	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
35	nsv1061318	chr19:27919584-28509647	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
36	nsv543978	chr19:27919584-28509647	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
37	nsv1060373	chr19:27919584-28530216	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
38	nsv1055340	chr19:27919584-28755810	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
39	nsv1063211	chr19:27919584-28777862	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
40	nsv543979	chr19:27919584-28777862	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
41	nsv1059604	chr19:27919584-28814901	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
42	nsv1064493	chr19:27919584-28837984	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
43	nsv911548	chr19:27948862-28845130	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
44	nsv1066407	chr19:27975329-28491356	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
45	nsv1066314	chr19:28081028-28365076	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
46	nsv1061907	chr19:28123218-28343487	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
47	nsv1058414	chr19:28196208-28702108	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
48	nsv1059005	chr19:28196929-28414634	Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
49	nsv579196	chr19:28200288-29010504	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
50	nsv911556	chr19:28243996-28888340	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs10401215	CTC-459F4.1	cis	Artery Aorta	GTEx
rs10401215	TMEM147	cis	parietal	SCAN
rs10401215	CDC16	trans	cerebellum	SCAN
rs10401215	LINC00662	cis	Whole Blood	GTEx
rs10401215	LOC642290	cis	multi-tissue	Pritchard
rs10401215	CTC-459F4.1	cis	Esophagus Muscularis	GTEx
rs10401215	ATP4A	cis	parietal	SCAN
rs10401215	CTC-459F4.1	cis	Skin Sun Exposed Lower leg	GTEx
rs10401215	CTC-459F4.1	cis	lung	GTEx
rs10401215	CTC-459F4.1	cis	Heart Left Ventricle	GTEx
rs10401215	CTC-459F4.1	cis	Thyroid	GTEx
rs10401215	ANKRD27	cis	cerebellum	SCAN
rs10401215	CTC-459F4.1	cis	Esophagus Mucosa	GTEx
rs10401215	CTC-459F4.1	cis	Stomach	GTEx
rs10401215	LOC388526	cis	lesional skin	skin_eQTL
rs10401215	CTC-459F4.1	cis	Artery Tibial	GTEx
rs10401215	PRODH2	cis	cerebellum	SCAN
rs10401215	CTC-459F4.1	cis	Muscle Skeletal	GTEx
rs10401215	CTC-459F4.1	cis	Adipose Subcutaneous	GTEx
rs10401215	CTC-459F4.1	cis	Nerve Tibial	GTEx

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:28285800-28303200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr19:28286000-28289400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:28286000-28294400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:28286000-28294400	Weak transcription	Fetal Kidney	kidney
5	chr19:28286000-28296800	Weak transcription	NH-A	brain
6	chr19:28286000-28297400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr19:28286000-28298400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr19:28286200-28290000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr19:28286200-28291600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr19:28286200-28291800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:28286200-28294400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr19:28286200-28295800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr19:28286200-28296400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr19:28286200-28296400	Weak transcription	Osteobl	bone
15	chr19:28286200-28298200	Weak transcription	HSMMtube	muscle
16	chr19:28286200-28298800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr19:28286200-28298800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr19:28286400-28290400	Weak transcription	Colon Smooth Muscle	Colon
19	chr19:28286400-28291800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr19:28286400-28294400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr19:28286400-28294400	Weak transcription	Fetal Brain Male	brain
22	chr19:28286400-28294400	Weak transcription	NHEK	skin
23	chr19:28286400-28295800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:28286400-28295800	Weak transcription	Fetal Thymus	thymus
25	chr19:28286400-28296000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr19:28286400-28296800	Weak transcription	Adipose Nuclei	Adipose
27	chr19:28286400-28299400	Weak transcription	Brain Anterior Caudate	brain
28	chr19:28286600-28294600	Weak transcription	Fetal Lung	lung
29	chr19:28286600-28295800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr19:28286600-28295800	Weak transcription	Right Ventricle	heart
31	chr19:28286600-28296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr19:28286600-28296200	Weak transcription	Small Intestine	intestine
33	chr19:28286600-28296400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:28286600-28297600	Weak transcription	Liver	Liver
35	chr19:28286600-28298400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr19:28286600-28299000	Weak transcription	NHLF	lung
37	chr19:28286600-28301000	Weak transcription	Brain Substantia Nigra	brain
38	chr19:28286800-28294400	Weak transcription	Fetal Brain Female	brain
39	chr19:28286800-28295400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr19:28286800-28295800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr19:28286800-28296000	Weak transcription	Brain Hippocampus Middle	brain
42	chr19:28286800-28296800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr19:28286800-28296800	Weak transcription	Hela-S3	cervix
44	chr19:28286800-28298400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr19:28286800-28299000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr19:28286800-28299400	Weak transcription	HSMM	muscle
47	chr19:28287000-28291400	Weak transcription	HepG2	liver
48	chr19:28287000-28294400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr19:28287000-28294400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr19:28287000-28295800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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