Variant report

Variant	rs10423207
Chromosome Location	chr19:52408631-52408632
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52407793-52408814	HepG2	liver:	n/a	n/a
2	STAT3	chr19:52408517-52408884	MCF10A-Er-Src	breast:	n/a	chr19:52408719-52408730
3	FOS	chr19:52408308-52408768	MCF10A-Er-Src	breast:	n/a	n/a
4	YY1	chr19:52407579-52408861	SK-N-SH_RA	brain:	n/a	chr19:52408350-52408358 chr19:52407871-52407881 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366
5	YY1	chr19:52407750-52408683	ECC-1	luminal epithelium:	n/a	chr19:52408350-52408358 chr19:52407871-52407881 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366
6	STAT3	chr19:52408155-52408749	MCF10A-Er-Src	breast:	n/a	chr19:52408719-52408730
7	STAT3	chr19:52408138-52408767	MCF10A-Er-Src	breast:	n/a	chr19:52408719-52408730
8	TBP	chr19:52407829-52408761	H1-hESC	embryonic stem cell:	n/a	n/a
9	CHD1	chr19:52407153-52408959	H1-hESC	embryonic stem cell:	n/a	n/a
10	YY1	chr19:52407672-52408705	ECC-1	luminal epithelium:	n/a	chr19:52408350-52408358 chr19:52407871-52407881 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366
11	REST	chr19:52407286-52408793	H1-neurons	neurons:	n/a	chr19:52407821-52407831
12	MXI1	chr19:52408066-52408744	H1-hESC	embryonic stem cell:	n/a	n/a
13	YY1	chr19:52407663-52408992	H1-hESC	embryonic stem cell:	n/a	chr19:52408350-52408358 chr19:52407871-52407881 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366
14	STAT3	chr19:52408538-52408738	MCF10A-Er-Src	breast:	n/a	chr19:52408719-52408730
15	POLR2A	chr19:52406924-52412041	H1-hESC	embryonic stem cell:	n/a	n/a
16	SIN3A	chr19:52407487-52408950	H1-hESC	embryonic stem cell:	n/a	n/a
17	YY1	chr19:52407558-52408646	SK-N-SH_RA	brain:	n/a	chr19:52408350-52408358 chr19:52407871-52407881 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366
18	EGR1	chr19:52407793-52408716	HCT-116	colon:	n/a	chr19:52408080-52408087
19	YY1	chr19:52407957-52408658	A549	lung:	n/a	chr19:52408350-52408358 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366
20	YY1	chr19:52407488-52408825	SK-N-SH	brain:	n/a	chr19:52408350-52408358 chr19:52407871-52407881 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366
21	STAT3	chr19:52408182-52408749	MCF10A-Er-Src	breast:	n/a	chr19:52408719-52408730
22	TCF7L2	chr19:52408143-52408683	HEK293	kidney:	n/a	n/a
23	MXI1	chr19:52407061-52408762	SK-N-SH	brain:	n/a	n/a
24	YY1	chr19:52407462-52408741	SK-N-SH	brain:	n/a	chr19:52408350-52408358 chr19:52407871-52407881 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366
25	BRCA1	chr19:52408183-52408699	H1-hESC	embryonic stem cell:	n/a	n/a
26	YY1	chr19:52407552-52408674	HepG2	liver:	n/a	chr19:52408350-52408358 chr19:52407871-52407881 chr19:52408349-52408359 chr19:52408352-52408360 chr19:52408349-52408371 chr19:52408348-52408360 chr19:52408347-52408366

No.	Distal block	Cell Line	Cell type
1	chr19:52317917..52321992-chr19:52406046..52408700,3	K562	blood:
2	chr19:52388375..52390016-chr19:52406809..52409493,2	K562	blood:
3	chr19:52399759..52403972-chr19:52406809..52409528,3	K562	blood:

Variant related genes	Relation type
ZNF649	TF binding region
ENSG00000187474	Chromatin interaction
ENSG00000161551	Chromatin interaction
ENSG00000198093	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10402612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10403324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10403351	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10422793	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10424737	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983219	1.00[EUR][1000 genomes]
rs17856123	1.00[EUR][1000 genomes]
rs28555625	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28848301	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28873793	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28890801	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57718486	1.00[EUR][1000 genomes]
rs58927826	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59534321	1.00[EUR][1000 genomes]
rs59868090	1.00[EUR][1000 genomes]
rs61002201	1.00[EUR][1000 genomes]
rs61052454	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61393893	1.00[EUR][1000 genomes]
rs6509594	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6509608	1.00[EUR][1000 genomes]
rs7247959	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7256504	1.00[EUR][1000 genomes]
rs7257221	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7257759	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934696	1.00[EUR][1000 genomes]
rs73934697	1.00[EUR][1000 genomes]
rs73934698	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73934699	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73934709	1.00[EUR][1000 genomes]
rs73937804	1.00[EUR][1000 genomes]
rs8108637	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8108819	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8109014	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8110109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8111193	1.00[EUR][1000 genomes]
rs8111380	1.00[EUR][1000 genomes]
rs8111503	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758767	chr19:51991896-52604625	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	578 gene(s)	inside rSNPs	diseases
2	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
3	nsv915725	chr19:52184488-52439676	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	541 gene(s)	inside rSNPs	diseases
4	esv34938	chr19:52227916-52630935	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv1061029	chr19:52249900-52614747	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	esv2757699	chr19:52259571-52604625	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv2751797	chr19:52259588-52604625	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv1061100	chr19:52259839-52617390	Strong transcription Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv1060519	chr19:52270087-52628611	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
10	nsv579998	chr19:52270942-52613105	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
11	nsv1056146	chr19:52271018-52617390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv1057485	chr19:52271309-52614747	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv870043	chr19:52271348-52619860	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv534202	chr19:52272356-52627403	Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
15	nsv1059263	chr19:52273257-52607771	ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
16	nsv1057290	chr19:52273257-52614747	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv1064732	chr19:52273257-52617390	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	nsv1059924	chr19:52273257-52628611	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
19	nsv1057217	chr19:52283498-52617132	Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1062154	chr19:52283498-52617390	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
21	nsv1060988	chr19:52283498-52621644	Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
22	nsv1058292	chr19:52284671-52614747	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
23	nsv1063940	chr19:52284671-52617390	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
24	esv2751798	chr19:52285788-52604625	ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
25	esv2751799	chr19:52285788-52604625	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
26	esv2751800	chr19:52285788-52604625	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
27	esv2751801	chr19:52285788-52604625	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
28	esv34502	chr19:52285829-52604625	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
29	nsv458734	chr19:52287452-52601399	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
30	nsv579999	chr19:52287452-52601399	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
31	nsv458735	chr19:52287452-52607765	Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
32	nsv458736	chr19:52287452-52607765	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
33	nsv580000	chr19:52287452-52607765	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
34	nsv1055523	chr19:52288763-52578312	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
35	nsv544055	chr19:52288763-52578312	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
36	nsv916346	chr19:52288798-52578302	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
37	nsv1065600	chr19:52295063-52500079	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
38	nsv544056	chr19:52295063-52500079	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
39	nsv1059596	chr19:52295063-52553755	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
40	nsv544057	chr19:52295063-52553755	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
41	nsv1064316	chr19:52295063-52593062	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
42	nsv544058	chr19:52295063-52593062	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
43	nsv580001	chr19:52301660-52517238	Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
44	nsv580002	chr19:52304146-52617298	Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
45	nsv458737	chr19:52306547-52601399	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
46	nsv580003	chr19:52306547-52601399	Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
47	nsv458738	chr19:52306547-52621644	Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
48	nsv580004	chr19:52306547-52621644	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
49	nsv531306	chr19:52327602-52616696	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
50	esv2758505	chr19:52346092-52533826	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52406400-52408800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr19:52406400-52411000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr19:52407000-52408800	Active TSS	Psoas Muscle	Psoas
4	chr19:52407000-52408800	Active TSS	NH-A	brain
5	chr19:52407000-52409000	Active TSS	Fetal Lung	lung
6	chr19:52407200-52408800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:52407200-52409000	Active TSS	Brain Anterior Caudate	brain
8	chr19:52407400-52408800	Active TSS	Brain Hippocampus Middle	brain
9	chr19:52407400-52408800	Active TSS	Duodenum Mucosa	Duodenum
10	chr19:52407400-52409000	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr19:52407400-52409000	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr19:52407600-52408800	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr19:52407800-52408800	ZNF genes & repeats	Thymus	Thymus
14	chr19:52408200-52408800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr19:52408400-52408800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr19:52408400-52408800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr19:52408400-52408800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr19:52408400-52408800	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr19:52408400-52408800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr19:52408400-52408800	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr19:52408400-52409000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr19:52408400-52409000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
23	chr19:52408400-52409000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr19:52408400-52409000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr19:52408400-52409000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr19:52408400-52409000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr19:52408400-52409000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr19:52408400-52409000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr19:52408400-52409000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr19:52408400-52409000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr19:52408400-52409200	Enhancers	HepG2	liver
32	chr19:52408400-52409400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr19:52408400-52411000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr19:52408600-52408800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr19:52408600-52408800	ZNF genes & repeats	Primary T cells from cord blood	blood
36	chr19:52408600-52408800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr19:52408600-52408800	ZNF genes & repeats	Liver	Liver
38	chr19:52408600-52408800	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr19:52408600-52408800	ZNF genes & repeats	Dnd41	blood
40	chr19:52408600-52408800	ZNF genes & repeats	K562	blood
41	chr19:52408600-52409000	ZNF genes & repeats	Fetal Kidney	kidney
42	chr19:52408600-52409000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
43	chr19:52408600-52411000	Weak transcription	Right Atrium	heart

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