Variant report

Variant rs61052454
Chromosome Location chr19:52406757-52406758
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:52348800-52406800 ZNF genes & repeats Liver Liver
2 chr19:52357800-52407400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr19:52358200-52407400 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
4 chr19:52388400-52406800 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
5 chr19:52388400-52407200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
6 chr19:52388800-52406800 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
7 chr19:52390000-52406800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
8 chr19:52390400-52407000 ZNF genes & repeats Primary B cells from peripheral blood blood
9 chr19:52390600-52407000 ZNF genes & repeats Primary monocytes fromperipheralblood blood
10 chr19:52390800-52406800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
11 chr19:52390800-52407400 ZNF genes & repeats GM12878-XiMat blood
12 chr19:52391400-52406800 ZNF genes & repeats Duodenum Mucosa Duodenum
13 chr19:52391600-52406800 ZNF genes & repeats Primary B cells from cord blood blood
14 chr19:52391800-52406800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr19:52391800-52407200 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
16 chr19:52392200-52406800 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
17 chr19:52392400-52407000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr19:52392600-52406800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
19 chr19:52393800-52406800 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr19:52393800-52406800 ZNF genes & repeats Fetal Intestine Small intestine
21 chr19:52393800-52406800 ZNF genes & repeats Lung lung
22 chr19:52393800-52406800 ZNF genes & repeats Thymus Thymus
23 chr19:52401200-52407400 ZNF genes & repeats Fetal Thymus thymus
24 chr19:52401800-52406800 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr19:52403000-52406800 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
26 chr19:52403000-52407000 Weak transcription Placenta Amnion Placenta Amnion
27 chr19:52403200-52407000 Weak transcription HUVEC blood vessel
28 chr19:52403200-52407000 Weak transcription Osteobl bone
29 chr19:52403600-52406800 ZNF genes & repeats Fetal Stomach stomach
30 chr19:52404000-52407000 ZNF genes & repeats Fetal Intestine Large intestine
31 chr19:52404400-52407000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr19:52404400-52407000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr19:52404600-52406800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr19:52404600-52407000 Weak transcription Muscle Satellite Cultured Cells --
35 chr19:52404600-52407000 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr19:52404800-52406800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr19:52404800-52407200 Weak transcription Stomach Mucosa stomach
38 chr19:52405400-52406800 ZNF genes & repeats Primary T cells effector/memory enriched fromperipheralblood blood
39 chr19:52405600-52406800 Transcr. at gene 5' and 3' H1 Cell Line embryonic stem cell
40 chr19:52405600-52406800 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
41 chr19:52405600-52407000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
42 chr19:52405600-52407000 Weak transcription NH-A brain
43 chr19:52405600-52408400 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr19:52405800-52407800 Active TSS iPS-15b Cell Line embryonic stem cell
45 chr19:52406000-52406800 ZNF genes & repeats Aorta Aorta
46 chr19:52406000-52406800 Flanking Active TSS Brain Anterior Caudate brain
47 chr19:52406000-52407000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr19:52406000-52407000 Enhancers Right Ventricle heart
49 chr19:52406200-52406800 ZNF genes & repeats Primary T helper memory cells from peripheral blood 1 blood
50 chr19:52406200-52406800 Flanking Active TSS Brain Angular Gyrus brain

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