Variant report

Variant	rs10429392
Chromosome Location	chr8:35858848-35858849
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10429326	1.00[AFR][1000 genomes]
rs57476452	0.85[AFR][1000 genomes]
rs58336370	0.85[AFR][1000 genomes]
rs60673671	0.80[AFR][1000 genomes]
rs73574438	0.84[AFR][1000 genomes]
rs73574441	1.00[AFR][1000 genomes]
rs73574484	1.00[AFR][1000 genomes]
rs73574487	1.00[AFR][1000 genomes]
rs73576382	1.00[AFR][1000 genomes]
rs73576388	0.84[AFR][1000 genomes]
rs73576391	0.95[AFR][1000 genomes]
rs73586186	0.85[AFR][1000 genomes]
rs73588104	0.85[AFR][1000 genomes]
rs73588111	0.85[AFR][1000 genomes]
rs73588112	0.85[AFR][1000 genomes]
rs73588113	0.85[AFR][1000 genomes]
rs73588118	0.85[AFR][1000 genomes]
rs73588122	0.85[AFR][1000 genomes]
rs73588126	0.85[AFR][1000 genomes]
rs73588128	0.85[AFR][1000 genomes]
rs73588130	0.85[AFR][1000 genomes]
rs73588131	0.85[AFR][1000 genomes]
rs73588133	0.85[AFR][1000 genomes]
rs73588134	0.85[AFR][1000 genomes]
rs73588138	0.85[AFR][1000 genomes]
rs73588148	0.85[AFR][1000 genomes]
rs73588150	0.85[AFR][1000 genomes]
rs73590012	0.85[AFR][1000 genomes]
rs73590015	0.85[AFR][1000 genomes]
rs73590016	0.85[AFR][1000 genomes]
rs73590017	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv831286	chr8:35802388-35950586	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35858600-35859200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:35858800-35859600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:35858800-35859800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links