Variant report
| Variant | rs73588113 |
|---|---|
| Chromosome Location | chr8:35824717-35824718 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10429326 | 0.85[AFR][1000 genomes] |
| rs10429392 | 0.85[AFR][1000 genomes] |
| rs57476452 | 1.00[AFR][1000 genomes] |
| rs58336370 | 1.00[AFR][1000 genomes] |
| rs60673671 | 0.95[AFR][1000 genomes] |
| rs73574441 | 0.85[AFR][1000 genomes] |
| rs73574484 | 0.85[AFR][1000 genomes] |
| rs73574487 | 0.85[AFR][1000 genomes] |
| rs73576382 | 0.85[AFR][1000 genomes] |
| rs73576388 | 0.89[AFR][1000 genomes] |
| rs73576391 | 0.80[AFR][1000 genomes] |
| rs73586169 | 0.84[AFR][1000 genomes] |
| rs73586186 | 1.00[AFR][1000 genomes] |
| rs73588104 | 1.00[AFR][1000 genomes] |
| rs73588111 | 1.00[AFR][1000 genomes] |
| rs73588112 | 1.00[AFR][1000 genomes] |
| rs73588118 | 1.00[AFR][1000 genomes] |
| rs73588122 | 1.00[AFR][1000 genomes] |
| rs73588126 | 1.00[AFR][1000 genomes] |
| rs73588128 | 1.00[AFR][1000 genomes] |
| rs73588130 | 1.00[AFR][1000 genomes] |
| rs73588131 | 1.00[AFR][1000 genomes] |
| rs73588133 | 1.00[AFR][1000 genomes] |
| rs73588134 | 1.00[AFR][1000 genomes] |
| rs73588138 | 1.00[AFR][1000 genomes] |
| rs73588148 | 1.00[AFR][1000 genomes] |
| rs73588150 | 1.00[AFR][1000 genomes] |
| rs73590012 | 1.00[AFR][1000 genomes] |
| rs73590015 | 1.00[AFR][1000 genomes] |
| rs73590016 | 1.00[AFR][1000 genomes] |
| rs73590017 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533420 | chr8:35358115-36227536 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032540 | chr8:35565491-35949132 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1024552 | chr8:35655964-36210907 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv539548 | chr8:35655964-36210907 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 5 | nsv831286 | chr8:35802388-35950586 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:35823800-35825400 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 2 | chr8:35823800-35828000 | Weak transcription | HSMM | muscle |
