Variant report

Variant	rs73588150
Chromosome Location	chr8:35834569-35834570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10429326	0.85[AFR][1000 genomes]
rs10429392	0.85[AFR][1000 genomes]
rs57476452	1.00[AFR][1000 genomes]
rs58336370	1.00[AFR][1000 genomes]
rs60673671	0.95[AFR][1000 genomes]
rs73574441	0.85[AFR][1000 genomes]
rs73574484	0.85[AFR][1000 genomes]
rs73574487	0.85[AFR][1000 genomes]
rs73576382	0.85[AFR][1000 genomes]
rs73576388	0.89[AFR][1000 genomes]
rs73576391	0.80[AFR][1000 genomes]
rs73586169	0.84[AFR][1000 genomes]
rs73586186	1.00[AFR][1000 genomes]
rs73588104	1.00[AFR][1000 genomes]
rs73588111	1.00[AFR][1000 genomes]
rs73588112	1.00[AFR][1000 genomes]
rs73588113	1.00[AFR][1000 genomes]
rs73588118	1.00[AFR][1000 genomes]
rs73588122	1.00[AFR][1000 genomes]
rs73588126	1.00[AFR][1000 genomes]
rs73588128	1.00[AFR][1000 genomes]
rs73588130	1.00[AFR][1000 genomes]
rs73588131	1.00[AFR][1000 genomes]
rs73588133	1.00[AFR][1000 genomes]
rs73588134	1.00[AFR][1000 genomes]
rs73588138	1.00[AFR][1000 genomes]
rs73588148	1.00[AFR][1000 genomes]
rs73590012	1.00[AFR][1000 genomes]
rs73590015	1.00[AFR][1000 genomes]
rs73590016	1.00[AFR][1000 genomes]
rs73590017	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv831286	chr8:35802388-35950586	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35831800-35837200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:35832200-35835400	Enhancers	HMEC	breast
3	chr8:35832400-35836400	Weak transcription	NHDF-Ad	bronchial
4	chr8:35832400-35837200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:35832400-35837400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:35832800-35835200	Enhancers	HSMM	muscle
7	chr8:35833200-35836600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:35833400-35835000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:35833800-35835200	Enhancers	Osteobl	bone
10	chr8:35834200-35836200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:35834400-35835000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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