Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10749203	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10787637	0.83[ASN][1000 genomes]
rs1079261	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885876	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885877	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10885878	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197582	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197585	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901063	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781551	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4259753	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4269847	0.83[ASN][1000 genomes]
rs4356140	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4384313	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4550150	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4611119	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7090693	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7096877	0.82[ASN][1000 genomes]
rs7096912	0.82[ASN][1000 genomes]
rs881042	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9731211	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9804260	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117955400-117966800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:117956000-117962800	Weak transcription	Fetal Stomach	stomach
3	chr10:117956800-117967200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117959600-117960600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:117959800-117960600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:117960000-117960600	Enhancers	Osteobl	bone

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