Variant report

Variant	rs10787637
Chromosome Location	chr10:117991693-117991694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10430632	0.83[ASN][1000 genomes]
rs10749203	0.90[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1079261	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10885876	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10885877	0.90[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885878	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10885887	0.80[CEU][hapmap]
rs11197582	0.89[CEU][hapmap];0.88[CHB][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11197585	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2901063	0.81[ASN][1000 genomes]
rs3781551	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4259753	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4269847	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4356140	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4384313	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4550150	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4611119	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7090693	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7096877	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7096912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs881042	0.89[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9731211	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9804260	0.90[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10787637	PNLIPRP2	cis	cerebellum	SCAN
rs10787637	TBC1D5	trans	cerebellum	SCAN
rs10787637	C10orf84	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117976800-117999800	Weak transcription	HSMM	muscle
2	chr10:117978200-117995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117984600-117996800	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:117986000-117996800	Weak transcription	Liver	Liver
5	chr10:117986600-117995000	Weak transcription	Fetal Stomach	stomach
6	chr10:117989600-117999600	Weak transcription	HSMMtube	muscle
7	chr10:117990200-117992600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:117990200-117993200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:117991400-117993400	Enhancers	Fetal Heart	heart
10	chr10:117991600-117991800	Enhancers	Fetal Kidney	kidney

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