Variant report

Variant	rs7090693
Chromosome Location	chr10:117971016-117971017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117968387..117969891-chr10:117970259..117972520,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10430632	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10749203	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787637	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1079261	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885876	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10885877	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197582	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901063	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3781551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4259753	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269847	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4356140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384313	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550150	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4611119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7078956	0.89[YRI][hapmap]
rs7096877	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7096912	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7100915	0.81[ASN][1000 genomes]
rs881042	0.94[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9731211	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9804260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117968600-117971600	Enhancers	Fetal Stomach	stomach
2	chr10:117969400-117971400	Enhancers	Fetal Muscle Leg	muscle
3	chr10:117969400-117971400	Enhancers	HSMMtube	muscle
4	chr10:117969400-117973400	Enhancers	HSMM	muscle
5	chr10:117969600-117971400	Enhancers	Rectal Smooth Muscle	rectum
6	chr10:117970000-117971200	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:117970000-117971400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:117970200-117971200	Enhancers	Colon Smooth Muscle	Colon
9	chr10:117970200-117971600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:117970200-117973400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:117970200-117973400	Enhancers	Liver	Liver
12	chr10:117970400-117971200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr10:117970400-117971200	Enhancers	Placenta	Placenta
14	chr10:117970400-117971200	Enhancers	Lung	lung
15	chr10:117970400-117971400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:117970400-117971400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:117970400-117971400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:117970400-117971400	Enhancers	NH-A	brain
19	chr10:117970400-117971400	Enhancers	NHLF	lung
20	chr10:117970400-117971600	Enhancers	Osteobl	bone
21	chr10:117970400-117972000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:117970600-117971200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr10:117970600-117973200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:117970800-117971400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:117970800-117974800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:117970800-117975000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:117970800-117975400	Weak transcription	Fetal Intestine Small	intestine
28	chr10:117971000-117971200	Enhancers	Fetal Lung	lung
29	chr10:117971000-117975000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:117971000-117975200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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