Variant report

Variant	rs4384313
Chromosome Location	chr10:117976083-117976084
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10430632	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10749203	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787637	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1079261	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885876	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10885877	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885878	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197582	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197585	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901063	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3781551	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4259753	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269847	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4356140	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550150	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4611119	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7090693	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096877	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7096912	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7100915	0.81[ASN][1000 genomes]
rs881042	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9731211	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9804260	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117973400-117986400	Weak transcription	Fetal Stomach	stomach
2	chr10:117973600-117989200	Weak transcription	HSMMtube	muscle
3	chr10:117974800-117976600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:117975200-117976200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:117975200-117976400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:117975400-117976200	Enhancers	Liver	Liver
7	chr10:117975400-117976400	Enhancers	Fetal Intestine Small	intestine
8	chr10:117975600-117976200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:117975600-117980000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:117975600-117987600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:117975800-117976800	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links