Variant report

Variant	rs10483662
Chromosome Location	chr14:56523205-56523206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10498480	1.00[EUR][1000 genomes]
rs10498482	1.00[EUR][1000 genomes]
rs17090767	1.00[EUR][1000 genomes]
rs17090780	1.00[EUR][1000 genomes]
rs17090791	1.00[EUR][1000 genomes]
rs17090840	1.00[EUR][1000 genomes]
rs17090844	1.00[EUR][1000 genomes]
rs17090848	1.00[EUR][1000 genomes]
rs17090859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2046095	1.00[EUR][1000 genomes]
rs58798057	1.00[EUR][1000 genomes]
rs73287424	1.00[EUR][1000 genomes]
rs74051596	1.00[EUR][1000 genomes]
rs74051597	1.00[EUR][1000 genomes]
rs74051598	1.00[EUR][1000 genomes]
rs74051599	1.00[EUR][1000 genomes]
rs74051600	1.00[EUR][1000 genomes]
rs74051601	1.00[EUR][1000 genomes]
rs74051602	1.00[EUR][1000 genomes]
rs74054303	1.00[EUR][1000 genomes]
rs74054305	1.00[EUR][1000 genomes]
rs8017790	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56515200-56525400	Weak transcription	Fetal Intestine Large	intestine
2	chr14:56521600-56524400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:56522000-56524400	Enhancers	Fetal Brain Male	brain
4	chr14:56522200-56523400	Enhancers	Fetal Brain Female	brain
5	chr14:56522400-56524400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:56522400-56524400	Enhancers	Brain Substantia Nigra	brain
7	chr14:56522600-56523400	Enhancers	Brain Angular Gyrus	brain
8	chr14:56522600-56523800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:56522600-56523800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:56522800-56523400	Enhancers	Brain Anterior Caudate	brain
11	chr14:56523000-56523400	Enhancers	Brain Cingulate Gyrus	brain
12	chr14:56523000-56524000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:56523000-56524000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:56523000-56524400	Enhancers	Brain Hippocampus Middle	brain
15	chr14:56523000-56524600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:56523200-56524000	Enhancers	Brain Germinal Matrix	brain
17	chr14:56523200-56524400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr14:56523200-56524400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr14:56523200-56525600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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