Variant report

Variant	rs17090859
Chromosome Location	chr14:56496793-56496794
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10483662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10498480	1.00[EUR][1000 genomes]
rs10498482	1.00[EUR][1000 genomes]
rs17090767	1.00[EUR][1000 genomes]
rs17090780	1.00[EUR][1000 genomes]
rs17090791	1.00[EUR][1000 genomes]
rs17090840	1.00[EUR][1000 genomes]
rs17090844	1.00[EUR][1000 genomes]
rs17090848	1.00[EUR][1000 genomes]
rs2046095	1.00[EUR][1000 genomes]
rs58798057	1.00[EUR][1000 genomes]
rs73287424	1.00[EUR][1000 genomes]
rs74051596	1.00[EUR][1000 genomes]
rs74051597	1.00[EUR][1000 genomes]
rs74051598	1.00[EUR][1000 genomes]
rs74051599	1.00[EUR][1000 genomes]
rs74051600	1.00[EUR][1000 genomes]
rs74051601	1.00[EUR][1000 genomes]
rs74051602	1.00[EUR][1000 genomes]
rs74054303	1.00[EUR][1000 genomes]
rs74054305	1.00[EUR][1000 genomes]
rs8017790	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56492400-56497000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:56494200-56496800	Enhancers	Psoas Muscle	Psoas
3	chr14:56495000-56496800	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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