Variant report
| Variant | rs10498482 |
|---|---|
| Chromosome Location | chr14:56488601-56488602 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:56487196..56488964-chr14:56491977..56494936,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10483662 | 1.00[EUR][1000 genomes] |
| rs10498480 | 1.00[EUR][1000 genomes] |
| rs17090767 | 1.00[EUR][1000 genomes] |
| rs17090780 | 1.00[EUR][1000 genomes] |
| rs17090791 | 1.00[EUR][1000 genomes] |
| rs17090840 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17090844 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17090848 | 1.00[EUR][1000 genomes] |
| rs17090859 | 1.00[EUR][1000 genomes] |
| rs2046095 | 1.00[EUR][1000 genomes] |
| rs58798057 | 1.00[EUR][1000 genomes] |
| rs73287424 | 1.00[EUR][1000 genomes] |
| rs74051596 | 1.00[EUR][1000 genomes] |
| rs74051597 | 1.00[EUR][1000 genomes] |
| rs74051598 | 1.00[EUR][1000 genomes] |
| rs74051599 | 1.00[EUR][1000 genomes] |
| rs74051600 | 1.00[EUR][1000 genomes] |
| rs74051601 | 1.00[EUR][1000 genomes] |
| rs74051602 | 1.00[EUR][1000 genomes] |
| rs74054303 | 1.00[EUR][1000 genomes] |
| rs74054305 | 1.00[EUR][1000 genomes] |
| rs8017790 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv901977 | chr14:56213392-56492996 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv34106 | chr14:56346245-56550642 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:56488400-56488800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
