Variant report

Variant	rs10484433
Chromosome Location	chr6:26030492-26030493
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:44)
CpG islands
(count:0)
Chromatin interactive
region (count:50)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:44 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr6:26029286-26034640	K562	blood:	n/a	n/a
2	SIN3AK20	chr6:26030060-26030915	K562	blood:	n/a	n/a
3	NR2F2	chr6:26030007-26034696	K562	blood:	n/a	n/a
4	POLR2A	chr6:26029970-26031357	K562	blood:	n/a	n/a
5	POLR2A	chr6:26025305-26034609	H1-hESC	embryonic stem cell:	n/a	n/a
6	MEF2A	chr6:26030200-26031359	K562	blood:	n/a	n/a
7	HEY1	chr6:26024804-26034728	K562	blood:	n/a	chr6:26026612-26026621 chr6:26032481-26032490 chr6:26026610-26026619
8	POLR2A	chr6:26025624-26032504	K562	blood:	n/a	n/a
9	POLR2A	chr6:26030086-26031354	H1-hESC	embryonic stem cell:	n/a	n/a
10	TBL1XR1	chr6:26029454-26033106	K562	blood:	n/a	n/a
11	POLR2A	chr6:26030122-26030607	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:26030199-26035426	MCF-7	breast:	n/a	n/a
13	HEY1	chr6:26030090-26031355	K562	blood:	n/a	n/a
14	POLR2A	chr6:26030054-26034223	H1-hESC	embryonic stem cell:	n/a	n/a
15	GATA1	chr6:26030122-26030641	PBDE	blood:	n/a	chr6:26030355-26030372 chr6:26030364-26030374
16	PML	chr6:26030015-26034696	K562	blood:	n/a	n/a
17	YY1	chr6:26030387-26030540	K562	blood:	n/a	n/a
18	POLR2A	chr6:26030171-26034714	K562	blood:	n/a	n/a
19	POLR2A	chr6:26030328-26034164	K562	blood:	n/a	n/a
20	HMGN3	chr6:26030017-26030516	K562	blood:	n/a	n/a
21	POLR2A	chr6:26030256-26034277	PANC-1	pancreas:	n/a	n/a
22	BCLAF1	chr6:26025400-26034703	K562	blood:	n/a	chr6:26033805-26033812 chr6:26027614-26027623 chr6:26027564-26027573
23	POLR2A	chr6:26030291-26034202	K562	blood:	n/a	n/a
24	BCLAF1	chr6:26029245-26034030	K562	blood:	n/a	chr6:26033805-26033812
25	POLR2A	chr6:26029259-26035421	K562	blood:	n/a	n/a
26	MXI1	chr6:26030311-26033386	K562	blood:	n/a	n/a
27	POLR2A	chr6:26025194-26034743	K562	blood:	n/a	n/a
28	EGR1	chr6:26030237-26030830	K562	blood:	n/a	n/a
29	PML	chr6:26029272-26034664	K562	blood:	n/a	n/a
30	POLR2A	chr6:26030117-26030847	H1-hESC	embryonic stem cell:	n/a	n/a
31	TAF7	chr6:26030132-26034758	H1-hESC	embryonic stem cell:	n/a	n/a
32	TAL1	chr6:26030257-26033976	K562	blood:	n/a	chr6:26030281-26030290
33	CCNT2	chr6:26030206-26031267	K562	blood:	n/a	chr6:26030355-26030375
34	TCF7L2	chr6:26029390-26030737	HEK293	kidney:	n/a	n/a
35	POLR2A	chr6:26030160-26030582	H1-hESC	embryonic stem cell:	n/a	n/a
36	TEAD4	chr6:26025461-26034682	K562	blood:	n/a	n/a
37	MXI1	chr6:26030218-26035652	SK-N-SH	brain:	n/a	n/a
38	POLR2A	chr6:26030130-26030710	PANC-1	pancreas:	n/a	n/a
39	MAFF	chr6:26030352-26033254	K562	blood:	n/a	n/a
40	POLR2A	chr6:26030392-26032515	HCT-116	colon:	n/a	n/a
41	POLR2A	chr6:26029626-26031371	K562	blood:	n/a	n/a
42	BCL3	chr6:26030173-26031317	K562	blood:	n/a	n/a
43	POLR2A	chr6:26030252-26030635	K562	blood:	n/a	n/a
44	ATF2	chr6:26030185-26034247	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:50 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26024607..26035097-chr6:27857610..27864739,17	K562	blood:
2	chr6:26029475..26032129-chr6:27798602..27801297,3	K562	blood:
3	chr19:3975952..3978559-chr6:26029120..26031820,2	K562	blood:
4	chr6:26030055..26033247-chr6:27790818..27793416,3	MCF-7	breast:
5	chr11:67272994..67275730-chr6:26029475..26032362,2	K562	blood:
6	chr6:26029794..26031440-chr6:27790869..27793037,2	K562	blood:
7	chr6:26029984..26031821-chr6:27485687..27487793,2	K562	blood:
8	chr10:21813597..21815483-chr6:26030304..26033115,2	K562	blood:
9	chr6:26030432..26031237-chr7:106809434..106810169,2	Hela-S3	cervix:
10	chr6:26029311..26033760-chr6:27774369..27777821,5	MCF-7	breast:
11	chr6:26030091..26032041-chr6:27775744..27779054,3	MCF-7	breast:
12	chr6:26029727..26031946-chr6:43910526..43912489,2	K562	blood:
13	chr6:26029156..26033137-chr6:27858699..27862567,9	K562	blood:
14	chr6:26017750..26036418-chr6:26116875..26130553,65	MCF-7	breast:
15	chr6:24657843..24659411-chr6:26030183..26032461,2	K562	blood:
16	chr6:26029513..26031973-chr6:26575071..26576731,2	K562	blood:
17	chr11:85540245..85541806-chr6:26029781..26032267,2	MCF-7	breast:
18	chr6:26029112..26031604-chr6:35695218..35697250,3	K562	blood:
19	chr6:26030052..26032000-chr6:27859191..27860757,2	MCF-7	breast:
20	chr6:26029648..26033370-chr6:27113347..27116266,3	MCF-7	breast:
21	chr6:26029982..26034393-chr6:27104962..27111668,7	K562	blood:
22	chr6:26029609..26032521-chr6:27805360..27808240,3	MCF-7	breast:
23	chr6:26030302..26034233-chr6:34203696..34206879,3	K562	blood:
24	chr6:26024161..26035534-chr6:27093020..27104638,25	K562	blood:
25	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
26	chr6:25724700..25728805-chr6:26024464..26033486,16	K562	blood:
27	chr17:56735336..56738021-chr6:26028431..26031257,2	MCF-7	breast:
28	chr17:56075959..56078294-chr6:26029823..26031811,2	MCF-7	breast:
29	chr6:26029300..26031904-chr6:27779187..27780986,2	K562	blood:
30	chr11:9406140..9408374-chr6:26027623..26030601,2	K562	blood:
31	chr6:26029763..26032265-chr6:27782038..27784376,2	MCF-7	breast:
32	chr6:26026115..26036040-chr6:27097153..27104835,26	K562	blood:
33	chr6:25672677..25675126-chr6:26028659..26030529,2	K562	blood:
34	chr6:26029987..26032449-chr6:27112365..27115475,3	MCF-7	breast:
35	chr5:137804423..137807174-chr6:26028881..26031632,2	K562	blood:
36	chr6:26019525..26036768-chr6:26154463..26163826,38	MCF-7	breast:
37	chr6:26029982..26033364-chr6:27104962..27109285,6	K562	blood:
38	chr20:52210370..52212391-chr6:26029990..26032325,2	MCF-7	breast:
39	chr6:26030074..26034864-chr6:27112849..27118591,14	K562	blood:
40	chr6:25719318..25721096-chr6:26029005..26031442,2	K562	blood:
41	chr6:25837870..25840460-chr6:26027977..26030503,2	K562	blood:
42	chr6:26029112..26031604-chr6:35695218..35697159,2	K562	blood:
43	chr1:11968057..11970111-chr6:26030418..26032943,2	K562	blood:
44	chr6:26030021..26034897-chr6:26196138..26201230,10	MCF-7	breast:
45	chr6:25266060..25267780-chr6:26028723..26030730,2	K562	blood:
46	chr6:26030223..26032455-chr6:27803494..27806163,2	MCF-7	breast:
47	chr6:26028749..26030747-chr9:140137187..140139054,2	K562	blood:
48	chr6:26025629..26034912-chr6:27111740..27118591,16	K562	blood:
49	chr15:65588202..65590020-chr6:26029785..26032241,2	K562	blood:
50	chr1:149856990..149861032-chr6:26028173..26031758,3	K562	blood:

No data

Variant related genes	Relation type
HIST1H4B	TF binding region
ENSG00000197409	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000201801	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000205339	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000096060	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000146047	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000167658	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000105856	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000111802	Chromatin interaction
ENSG00000164508	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1045537	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484435	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191445	0.83[CEU][hapmap]
rs13191776	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13192365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13193424	1.00[ASN][1000 genomes]
rs13195279	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs13195692	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196552	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197334	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198474	0.83[CEU][hapmap]
rs13200797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200888	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202371	1.00[ASN][1000 genomes]
rs13202688	0.83[CEU][hapmap]
rs13203673	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206443	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206501	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207673	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap]
rs13210399	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211947	0.83[CEU][hapmap]
rs13212652	0.89[EUR][1000 genomes]
rs13214280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216785	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220395	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891235	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891261	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891264	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891315	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891334	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17586553	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17586784	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17587226	0.91[CEU][hapmap]
rs17587597	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051539	1.00[ASN][1000 genomes]
rs2298091	1.00[CHB][hapmap]
rs28360595	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34027471	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34116162	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34233736	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34391493	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs34791189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804024	0.84[AMR][1000 genomes]
rs35069699	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35116528	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35169013	0.81[ASN][1000 genomes]
rs35249036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35367169	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35378061	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35402046	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35484309	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35528636	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35778245	1.00[ASN][1000 genomes]
rs35825164	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35902160	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36012762	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3734523	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs3734528	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3752417	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56195001	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294283	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60512607	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66790453	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67296946	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67844427	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs68149500	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931120	0.81[ASN][1000 genomes]
rs6940007	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs71557315	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71557316	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832596	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834617	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834623	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748167	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7749414	1.00[ASN][1000 genomes]
rs9295675	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9461219	0.85[MEX][hapmap]
rs9461222	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs9461223	0.81[ASN][1000 genomes]
rs9467635	0.83[CEU][hapmap]
rs9467684	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
17	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
18	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
19	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
20	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
21	nsv1026692	chr6:26027408-26067081	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	363 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10484433	BTN3A2	Cis_1M	lymphoblastoid	RTeQTL
rs10484433	BTN3A2	cis	multi-tissue	Pritchard
rs10484433	BTN3A2	cis	lymphoblastoid	seeQTL
rs10484433	BTN3A2///BTN3A3	Cis_1M	lymphoblastoid	RTeQTL
rs10484433	HLA-A	cis	multi-tissue	Pritchard

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26027600-26031600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:26027600-26031600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:26027600-26031800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:26027600-26031800	Weak transcription	Esophagus	oesophagus
5	chr6:26027600-26031800	Weak transcription	Gastric	stomach
6	chr6:26027600-26031800	Weak transcription	Left Ventricle	heart
7	chr6:26027600-26031800	Weak transcription	Lung	lung
8	chr6:26027600-26031800	Weak transcription	Pancreas	Pancrea
9	chr6:26027600-26031800	Weak transcription	Small Intestine	intestine
10	chr6:26027600-26033400	Weak transcription	Spleen	Spleen
11	chr6:26027800-26031000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:26027800-26031800	Weak transcription	Right Ventricle	heart
13	chr6:26027800-26032000	Weak transcription	Fetal Brain Male	brain
14	chr6:26028000-26031000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:26028000-26031000	Enhancers	HepG2	liver
16	chr6:26028000-26031600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:26028000-26031600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:26028000-26031600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:26028000-26031600	Weak transcription	Aorta	Aorta
20	chr6:26028000-26031600	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:26028000-26031600	Weak transcription	Stomach Mucosa	stomach
22	chr6:26028000-26031800	Weak transcription	Brain Angular Gyrus	brain
23	chr6:26028000-26031800	Weak transcription	Right Atrium	heart
24	chr6:26028000-26031800	Weak transcription	HSMMtube	muscle
25	chr6:26028200-26030800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:26028200-26031000	Weak transcription	Fetal Brain Female	brain
27	chr6:26028200-26031000	Weak transcription	Fetal Kidney	kidney
28	chr6:26028200-26031000	Weak transcription	NHEK	skin
29	chr6:26028200-26031400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:26028200-26031400	Weak transcription	HSMM	muscle
31	chr6:26028200-26031600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:26028200-26031600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:26028200-26031600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:26028200-26031600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:26028200-26031600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:26028200-26031600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:26028200-26031800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:26028200-26031800	Weak transcription	Brain Substantia Nigra	brain
39	chr6:26028200-26031800	Weak transcription	Placenta	Placenta
40	chr6:26028200-26031800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:26028400-26030600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:26028400-26030800	Weak transcription	HMEC	breast
43	chr6:26028400-26031000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:26028400-26031000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:26028400-26031000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:26028400-26031000	Weak transcription	Fetal Intestine Large	intestine
47	chr6:26028400-26031000	Weak transcription	Fetal Intestine Small	intestine
48	chr6:26028400-26031000	Weak transcription	HUVEC	blood vessel
49	chr6:26028400-26031000	Weak transcription	NHDF-Ad	bronchial
50	chr6:26028400-26031200	Weak transcription	Monocytes-CD14+_RO01746	blood

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