Variant report

Variant	rs3734528
Chromosome Location	chr6:26022244-26022245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:295)
CpG islands
(count:0)
Chromatin interactive
region (count:36)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:295 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr6:26021660-26022284	GM12891	blood:	n/a	n/a
2	MAFK	chr6:26022206-26022340	HepG2	liver:	n/a	n/a
3	EBF1	chr6:26021649-26022291	GM12878	blood:	n/a	n/a
4	UBTF	chr6:26021741-26022322	K562	blood:	n/a	n/a
5	PML	chr6:26021698-26022250	GM12878	blood:	n/a	n/a
6	YY1	chr6:26021635-26022301	GM12892	blood:	n/a	n/a
7	MAFK	chr6:26021724-26022426	K562	blood:	n/a	n/a
8	POLR2A	chr6:26020527-26022597	GM12891	blood:	n/a	n/a
9	BHLHE40	chr6:26021802-26022257	A549	lung:	n/a	n/a
10	POLR2A	chr6:26020372-26022413	MCF-7	breast:	n/a	n/a
11	MBD4	chr6:26021730-26022477	HepG2	liver:	n/a	n/a
12	POLR2A	chr6:26020514-26022622	GM19193	blood:	n/a	n/a
13	CEBPB	chr6:26021827-26022641	IMR90	lung:	n/a	n/a
14	POLR2A	chr6:26020505-26022713	GM18505	blood:	n/a	n/a
15	ATF2	chr6:26020387-26022657	H1-hESC	embryonic stem cell:	n/a	n/a
16	GTF2F1	chr6:26021675-26022422	H1-hESC	embryonic stem cell:	n/a	n/a
17	TAF1	chr6:26020539-26022319	H1-hESC	embryonic stem cell:	n/a	n/a
18	TCF12	chr6:26021659-26022277	GM12878	blood:	n/a	n/a
19	MYBL2	chr6:26021596-26022455	HepG2	liver:	n/a	n/a
20	PAX5	chr6:26021805-26022394	GM12878	blood:	n/a	n/a
21	TCF12	chr6:26020392-26022752	A549	lung:	n/a	n/a
22	POLR2A	chr6:26021699-26022611	A549	lung:	n/a	n/a
23	GATA3	chr6:26020325-26022724	A549	lung:	n/a	chr6:26022570-26022578
24	GATA3	chr6:26021601-26022633	MCF-7	breast:	n/a	chr6:26022570-26022578
25	TAF1	chr6:26021559-26022286	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:26020494-26022751	U87	brain:	n/a	n/a
27	EP300	chr6:26021590-26022290	A549	lung:	n/a	chr6:26021820-26021836
28	POLR2A	chr6:26020507-26022579	HEK293	kidney:	n/a	n/a
29	PBX3	chr6:26021703-26022258	A549	lung:	n/a	n/a
30	POLR2A	chr6:26020353-26022750	PFSK-1	brain:	n/a	n/a
31	POU2F2	chr6:26020410-26022417	GM12878	blood:	n/a	n/a
32	RCOR1	chr6:26020513-26022667	Hela-S3	cervix:	n/a	n/a
33	TCF7L2	chr6:26020585-26022325	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr6:26020495-26022765	HCT-116	colon:	n/a	n/a
35	E2F4	chr6:26021593-26022253	K562	blood:	n/a	chr6:26021786-26021793 chr6:26021784-26021795 chr6:26021785-26021797 chr6:26021786-26021793 chr6:26021785-26021794 chr6:26021786-26021793
36	POLR2A	chr6:26020302-26022826	SK-N-MC	brain:	n/a	n/a
37	RELA	chr6:26020510-26022601	GM12891	blood:	n/a	n/a
38	YY1	chr6:26021130-26022308	ECC-1	luminal epithelium:	n/a	n/a
39	IRF3	chr6:26022156-26022692	Hela-S3	cervix:	n/a	chr6:26022536-26022545
40	MAZ	chr6:26021451-26022406	GM12878	blood:	n/a	n/a
41	EP300	chr6:26021604-26022652	A549	lung:	n/a	chr6:26021820-26021836
42	ETS1	chr6:26021691-26022411	A549	lung:	n/a	chr6:26021729-26021743
43	POLR2A	chr6:26020647-26022596	ECC-1	luminal epithelium:	n/a	n/a
44	MAX	chr6:26020817-26022357	MCF-7	breast:	n/a	n/a
45	PML	chr6:26021222-26022394	K562	blood:	n/a	n/a
46	SIN3A	chr6:26021719-26022517	H1-hESC	embryonic stem cell:	n/a	n/a
47	CHD1	chr6:26020088-26022955	IMR90	lung:	n/a	chr6:26021724-26021734
48	POLR2A	chr6:26021609-26022655	HCT-116	colon:	n/a	n/a
49	MAZ	chr6:26020377-26022720	IMR90	lung:	n/a	n/a
50	JUND	chr6:26020570-26022382	H1-hESC	embryonic stem cell:	n/a	chr6:26020585-26020594

No data

(count:36 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:110887461..110888206-chr6:26021637..26022350,2	Hela-S3	cervix:
2	chr6:26020264..26023736-chr6:26216792..26220704,4	MCF-7	breast:
3	chr15:51057335..51059727-chr6:26020365..26022635,2	MCF-7	breast:
4	chr6:26019943..26022943-chr6:27098200..27102148,7	MCF-7	breast:
5	chr6:26020614..26023729-chr6:26272152..26276212,4	MCF-7	breast:
6	chr14:75745174..75745829-chr6:26021851..26022783,2	Hela-S3	cervix:
7	chr1:151254480..151256114-chr6:26019497..26022258,2	MCF-7	breast:
8	chr6:26020721..26023023-chr6:27777113..27779197,2	MCF-7	breast:
9	chr6:26021111..26023259-chr6:27860792..27862368,2	K562	blood:
10	chr6:26017750..26036418-chr6:26116875..26130553,65	MCF-7	breast:
11	chr6:26020084..26022289-chr6:32156982..32159978,2	MCF-7	breast:
12	chr6:26020896..26022698-chr6:27805218..27807913,2	MCF-7	breast:
13	chr6:26018945..26024445-chr6:27858774..27864727,7	MCF-7	breast:
14	chr6:26020252..26023371-chr6:27112256..27114607,3	MCF-7	breast:
15	chr6:26020260..26024010-chr6:27780504..27784636,5	MCF-7	breast:
16	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
17	chr5:14872363..14873864-chr6:26021710..26023410,2	MCF-7	breast:
18	chr6:24719372..24721476-chr6:26021686..26024000,3	K562	blood:
19	chr6:26020714..26025029-chr6:27113708..27118688,4	K562	blood:
20	chr6:17706222..17707873-chr6:26020674..26023550,2	MCF-7	breast:
21	chr6:26021793..26022325-chr6:26156446..26157084,2	HCT-116	colon:
22	chr6:26019525..26036768-chr6:26154463..26163826,38	MCF-7	breast:
23	chr6:26022227..26024181-chr9:131872412..131874622,2	K562	blood:
24	chr6:26019660..26022685-chr6:27833901..27836758,3	MCF-7	breast:
25	chr11:62607107..62608993-chr6:26021546..26024523,3	MCF-7	breast:
26	chr6:26020982..26024830-chr6:26195555..26199073,5	MCF-7	breast:
27	chr6:26021429..26022414-chr9:35103081..35104032,2	Hela-S3	cervix:
28	chr6:26021190..26023372-chr6:27113779..27115327,2	MCF-7	breast:
29	chr14:60714826..60716505-chr6:26021297..26023355,2	MCF-7	breast:
30	chr6:25990980..25994781-chr6:26019644..26023390,9	MCF-7	breast:
31	chr6:24719119..24721965-chr6:26020764..26023234,2	MCF-7	breast:
32	chr22:39916518..39917032-chr6:26021814..26022513,2	Hela-S3	cervix:
33	chr6:26020523..26023508-chr6:26233779..26236758,2	MCF-7	breast:
34	chr6:26019933..26022464-chr6:27857272..27860270,2	MCF-7	breast:
35	chr6:26022022..26022535-chr9:77703007..77703701,2	Hela-S3	cervix:
36	chr6:26021018..26024759-chr6:27113066..27116254,4	K562	blood:

No data

Variant related genes	Relation type
HIST1H1A	TF binding region
ENSG00000272065	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000204304	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000143373	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000272057	Chromatin interaction
ENSG00000100614	Chromatin interaction
ENSG00000165283	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000111229	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000254718	Chromatin interaction
ENSG00000138600	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000134996	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000128272	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000272269	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000218690	Chromatin interaction
ENSG00000112308	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000119383	Chromatin interaction
ENSG00000272462	Chromatin interaction
ENSG00000095321	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000124789	Chromatin interaction
ENSG00000106733	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1045537	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484433	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484435	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191445	0.83[CEU][hapmap]
rs13191776	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193424	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195279	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13195692	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196552	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197334	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198474	0.83[CEU][hapmap]
rs13200797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200888	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201341	0.83[CEU][hapmap]
rs13201821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202371	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202688	0.83[CEU][hapmap]
rs13203673	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206443	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206501	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207673	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.82[EUR][1000 genomes]
rs13210399	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211947	0.83[CEU][hapmap]
rs13212652	0.86[EUR][1000 genomes]
rs13214280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216785	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220395	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13220488	0.82[EUR][1000 genomes]
rs16891235	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891261	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16891264	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16891315	0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891334	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17586553	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17586784	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587226	0.91[CEU][hapmap]
rs17587597	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051539	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298091	1.00[CHB][hapmap]
rs28360595	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34027471	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34116162	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34233736	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34391493	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34791189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804024	0.84[AMR][1000 genomes]
rs35069699	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35116528	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35169013	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35249036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35367169	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35378061	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35402046	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35484309	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35528636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35778245	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35825164	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35902160	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36012762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3734523	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs3752417	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56195001	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294283	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60512607	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66790453	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67296946	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67844427	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68149500	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931120	0.81[ASN][1000 genomes]
rs6940007	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs71557315	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71557316	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72832596	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834617	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834623	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748167	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7749414	1.00[ASN][1000 genomes]
rs9295675	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9461219	0.85[MEX][hapmap]
rs9461222	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs9461223	0.81[ASN][1000 genomes]
rs9467635	0.83[CEU][hapmap]
rs9467684	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3734528	BTN3A2///BTN3A3	Cis_1M	lymphoblastoid	RTeQTL
rs3734528	BTN3A2	cis	lymphoblastoid	seeQTL
rs3734528	BTN3A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26019000-26023400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:26019400-26022800	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:26019600-26022800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:26019800-26022600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:26019800-26022600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:26019800-26022800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:26019800-26023000	Active TSS	Brain Germinal Matrix	brain
8	chr6:26019800-26023400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:26020000-26022400	Active TSS	Placenta Amnion	Placenta Amnion
10	chr6:26020000-26022800	Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:26020000-26022800	Active TSS	Fetal Kidney	kidney
12	chr6:26020200-26022400	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr6:26020200-26022400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:26020200-26022600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:26020200-26022600	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr6:26020200-26022600	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr6:26020200-26022600	Active TSS	Fetal Intestine Small	intestine
18	chr6:26020200-26022600	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr6:26020200-26022600	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr6:26020200-26022600	Active TSS	Right Ventricle	heart
21	chr6:26020200-26022600	Active TSS	NHLF	lung
22	chr6:26020200-26022800	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr6:26020200-26022800	Active TSS	Fetal Brain Female	brain
24	chr6:26020200-26022800	Active TSS	Fetal Stomach	stomach
25	chr6:26020200-26022800	Active TSS	A549	lung
26	chr6:26020200-26023400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:26020400-26022400	ZNF genes & repeats	Fetal Brain Male	brain
28	chr6:26020400-26022400	Active TSS	Psoas Muscle	Psoas
29	chr6:26020400-26022600	Active TSS	Brain Cingulate Gyrus	brain
30	chr6:26020400-26022600	Active TSS	Rectal Smooth Muscle	rectum
31	chr6:26020400-26022800	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr6:26020400-26024200	Active TSS	Thymus	Thymus
33	chr6:26020600-26022400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:26020600-26022400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:26020600-26022400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:26020600-26022400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:26020600-26022400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:26020600-26022400	Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr6:26020600-26022400	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr6:26020600-26022400	Active TSS	Brain Angular Gyrus	brain
41	chr6:26020600-26022400	Active TSS	Esophagus	oesophagus
42	chr6:26020600-26022400	Active TSS	Left Ventricle	heart
43	chr6:26020600-26022400	Active TSS	Lung	lung
44	chr6:26020600-26022400	Active TSS	Ovary	ovary
45	chr6:26020600-26022400	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr6:26020600-26022400	Active TSS	Small Intestine	intestine
47	chr6:26020600-26022400	Active TSS	HSMM	muscle
48	chr6:26020600-26022600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:26020600-26022600	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr6:26020600-26022600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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