Variant report

Variant	rs28360595
Chromosome Location	chr6:26030044-26030045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:46)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr6:26029286-26034640	K562	blood:	n/a	n/a
2	NR2F2	chr6:26030007-26034696	K562	blood:	n/a	n/a
3	POLR2A	chr6:26029970-26031357	K562	blood:	n/a	n/a
4	POLR2A	chr6:26025305-26034609	H1-hESC	embryonic stem cell:	n/a	n/a
5	HEY1	chr6:26024804-26034728	K562	blood:	n/a	chr6:26026612-26026621 chr6:26032481-26032490 chr6:26026610-26026619
6	POLR2A	chr6:26025624-26032504	K562	blood:	n/a	n/a
7	TBL1XR1	chr6:26029454-26033106	K562	blood:	n/a	n/a
8	TAF7	chr6:26029249-26030089	H1-hESC	embryonic stem cell:	n/a	n/a
9	PML	chr6:26030015-26034696	K562	blood:	n/a	n/a
10	HMGN3	chr6:26030017-26030516	K562	blood:	n/a	n/a
11	BCLAF1	chr6:26025400-26034703	K562	blood:	n/a	chr6:26033805-26033812 chr6:26027614-26027623 chr6:26027564-26027573
12	BCLAF1	chr6:26029245-26034030	K562	blood:	n/a	chr6:26033805-26033812
13	POLR2A	chr6:26029259-26035421	K562	blood:	n/a	n/a
14	POLR2A	chr6:26025194-26034743	K562	blood:	n/a	n/a
15	PML	chr6:26029272-26034664	K562	blood:	n/a	n/a
16	TCF7L2	chr6:26029390-26030737	HEK293	kidney:	n/a	n/a
17	TEAD4	chr6:26025461-26034682	K562	blood:	n/a	n/a
18	POLR2A	chr6:26029626-26031371	K562	blood:	n/a	n/a

No data

(count:46 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26024607..26035097-chr6:27857610..27864739,17	K562	blood:
2	chr6:26029475..26032129-chr6:27798602..27801297,3	K562	blood:
3	chr19:3975952..3978559-chr6:26029120..26031820,2	K562	blood:
4	chr11:67272994..67275730-chr6:26029475..26032362,2	K562	blood:
5	chr6:26029794..26031440-chr6:27790869..27793037,2	K562	blood:
6	chr6:26029984..26031821-chr6:27485687..27487793,2	K562	blood:
7	chr6:26029311..26033760-chr6:27774369..27777821,5	MCF-7	breast:
8	chr6:26029727..26031946-chr6:43910526..43912489,2	K562	blood:
9	chr6:25725904..25728723-chr6:26024464..26030208,7	K562	blood:
10	chr6:26029156..26033137-chr6:27858699..27862567,9	K562	blood:
11	chr6:20401760..20404654-chr6:26027213..26030281,4	K562	blood:
12	chr6:26017750..26036418-chr6:26116875..26130553,65	MCF-7	breast:
13	chr6:26029513..26031973-chr6:26575071..26576731,2	K562	blood:
14	chr11:85540245..85541806-chr6:26029781..26032267,2	MCF-7	breast:
15	chr6:26029112..26031604-chr6:35695218..35697250,3	K562	blood:
16	chr6:26029648..26033370-chr6:27113347..27116266,3	MCF-7	breast:
17	chr6:26029982..26034393-chr6:27104962..27111668,7	K562	blood:
18	chr6:26027372..26030332-chr9:140134858..140136489,2	K562	blood:
19	chr6:26029609..26032521-chr6:27805360..27808240,3	MCF-7	breast:
20	chr6:26024161..26035534-chr6:27093020..27104638,25	K562	blood:
21	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
22	chr1:35644190..35646480-chr6:26028199..26030467,2	K562	blood:
23	chr6:25724700..25728805-chr6:26024464..26033486,16	K562	blood:
24	chr19:39899583..39902473-chr6:26027733..26030445,2	K562	blood:
25	chr17:56735336..56738021-chr6:26028431..26031257,2	MCF-7	breast:
26	chr17:56075959..56078294-chr6:26029823..26031811,2	MCF-7	breast:
27	chr6:26029300..26031904-chr6:27779187..27780986,2	K562	blood:
28	chr11:9406140..9408374-chr6:26027623..26030601,2	K562	blood:
29	chr6:26029763..26032265-chr6:27782038..27784376,2	MCF-7	breast:
30	chr6:26026115..26036040-chr6:27097153..27104835,26	K562	blood:
31	chr6:25672677..25675126-chr6:26028659..26030529,2	K562	blood:
32	chr6:26029987..26032449-chr6:27112365..27115475,3	MCF-7	breast:
33	chr5:137804423..137807174-chr6:26028881..26031632,2	K562	blood:
34	chr6:26019525..26036768-chr6:26154463..26163826,38	MCF-7	breast:
35	chr6:26029982..26033364-chr6:27104962..27109285,6	K562	blood:
36	chr20:52210370..52212391-chr6:26029990..26032325,2	MCF-7	breast:
37	chr6:25719318..25721096-chr6:26029005..26031442,2	K562	blood:
38	chr6:25925378..25927677-chr6:26028579..26030231,2	K562	blood:
39	chr6:25837870..25840460-chr6:26027977..26030503,2	K562	blood:
40	chr6:26029112..26031604-chr6:35695218..35697159,2	K562	blood:
41	chr6:26030021..26034897-chr6:26196138..26201230,10	MCF-7	breast:
42	chr6:25266060..25267780-chr6:26028723..26030730,2	K562	blood:
43	chr6:26028749..26030747-chr9:140137187..140139054,2	K562	blood:
44	chr6:26025629..26034912-chr6:27111740..27118591,16	K562	blood:
45	chr15:65588202..65590020-chr6:26029785..26032241,2	K562	blood:
46	chr1:149856990..149861032-chr6:26028173..26031758,3	K562	blood:

No data

Variant related genes	Relation type
HIST1H4B	TF binding region
ENSG00000184825	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000096060	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000164508	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000112242	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000205339	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000112337	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000116560	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000167658	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000266559	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000146047	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1045537	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484433	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191776	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192365	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192713	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193424	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195279	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13195692	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196552	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13197334	1.00[ASN][1000 genomes]
rs13200797	1.00[ASN][1000 genomes]
rs13200888	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201821	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202371	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203673	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206443	1.00[ASN][1000 genomes]
rs13206501	1.00[ASN][1000 genomes]
rs13207673	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13210399	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214280	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216785	1.00[ASN][1000 genomes]
rs13220395	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220488	0.90[EUR][1000 genomes]
rs16891235	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891261	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891264	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891315	1.00[ASN][1000 genomes]
rs16891334	1.00[ASN][1000 genomes]
rs17586553	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17586784	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587226	0.87[EUR][1000 genomes]
rs17587597	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051539	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34027471	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34116162	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34233736	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34391493	0.80[AMR][1000 genomes]
rs34525648	0.86[EUR][1000 genomes]
rs34791189	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804024	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35069699	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35116528	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35169013	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35249036	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335639	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35367169	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35378061	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35402046	1.00[ASN][1000 genomes]
rs35484309	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35528636	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35778245	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35825164	1.00[ASN][1000 genomes]
rs35902160	1.00[ASN][1000 genomes]
rs36012762	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3734523	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3734528	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3752417	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56195001	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56294283	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60512607	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66790453	1.00[ASN][1000 genomes]
rs67296946	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67491322	0.87[EUR][1000 genomes]
rs67844427	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68149500	1.00[ASN][1000 genomes]
rs6903228	0.86[EUR][1000 genomes]
rs6931120	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6940007	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71557315	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71557316	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832596	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834617	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834623	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749414	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295675	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9461222	0.86[EUR][1000 genomes]
rs9461223	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9467632	0.82[EUR][1000 genomes]
rs9467635	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
17	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
18	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
19	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
20	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
21	nsv1026692	chr6:26027408-26067081	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	363 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs28360595	BTN3A2	Cis_1M	lymphoblastoid	RTeQTL
rs28360595	BTN3A2///BTN3A3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26027600-26031600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:26027600-26031600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:26027600-26031800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:26027600-26031800	Weak transcription	Esophagus	oesophagus
5	chr6:26027600-26031800	Weak transcription	Gastric	stomach
6	chr6:26027600-26031800	Weak transcription	Left Ventricle	heart
7	chr6:26027600-26031800	Weak transcription	Lung	lung
8	chr6:26027600-26031800	Weak transcription	Pancreas	Pancrea
9	chr6:26027600-26031800	Weak transcription	Small Intestine	intestine
10	chr6:26027600-26033400	Weak transcription	Spleen	Spleen
11	chr6:26027800-26030400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:26027800-26031000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:26027800-26031800	Weak transcription	Right Ventricle	heart
14	chr6:26027800-26032000	Weak transcription	Fetal Brain Male	brain
15	chr6:26028000-26030200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:26028000-26030200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:26028000-26030200	Enhancers	Hela-S3	cervix
18	chr6:26028000-26030400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:26028000-26030400	Weak transcription	NHLF	lung
20	chr6:26028000-26031000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:26028000-26031000	Enhancers	HepG2	liver
22	chr6:26028000-26031600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:26028000-26031600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:26028000-26031600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:26028000-26031600	Weak transcription	Aorta	Aorta
26	chr6:26028000-26031600	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:26028000-26031600	Weak transcription	Stomach Mucosa	stomach
28	chr6:26028000-26031800	Weak transcription	Brain Angular Gyrus	brain
29	chr6:26028000-26031800	Weak transcription	Right Atrium	heart
30	chr6:26028000-26031800	Weak transcription	HSMMtube	muscle
31	chr6:26028200-26030200	Weak transcription	Fetal Lung	lung
32	chr6:26028200-26030800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:26028200-26031000	Weak transcription	Fetal Brain Female	brain
34	chr6:26028200-26031000	Weak transcription	Fetal Kidney	kidney
35	chr6:26028200-26031000	Weak transcription	NHEK	skin
36	chr6:26028200-26031400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:26028200-26031400	Weak transcription	HSMM	muscle
38	chr6:26028200-26031600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:26028200-26031600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:26028200-26031600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:26028200-26031600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:26028200-26031600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:26028200-26031600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:26028200-26031800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:26028200-26031800	Weak transcription	Brain Substantia Nigra	brain
46	chr6:26028200-26031800	Weak transcription	Placenta	Placenta
47	chr6:26028200-26031800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:26028400-26030200	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr6:26028400-26030400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:26028400-26030400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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