Variant report

Variant	rs10484446
Chromosome Location	chr6:11131165-11131166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11124119..11126700-chr6:11129420..11131578,2	MCF-7	breast:
2	chr6:11130990..11133176-chr6:11137662..11139279,2	K562	blood:
3	chr6:11130403..11132695-chr6:11134781..11136528,2	K562	blood:
4	chr6:11121662..11123168-chr6:11130137..11132092,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484448	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10946967	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946968	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947002	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11751998	0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759939	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12190970	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193702	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12194681	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199551	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12200717	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205389	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211539	0.82[CEU][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212683	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213689	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711180	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6456846	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906952	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11095600-11135200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:11101600-11134800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:11112400-11134600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:11112400-11135000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:11112400-11135400	Weak transcription	Thymus	Thymus
6	chr6:11112400-11137200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:11112600-11134600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:11112600-11134600	Weak transcription	Dnd41	blood
9	chr6:11112600-11135000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:11116600-11144000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:11120600-11134600	Weak transcription	Fetal Thymus	thymus
12	chr6:11120600-11136800	Weak transcription	Brain Germinal Matrix	brain
13	chr6:11120800-11134600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:11121200-11134800	Weak transcription	HMEC	breast
15	chr6:11121200-11135200	Weak transcription	HSMMtube	muscle
16	chr6:11121200-11136800	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:11121400-11135000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:11121600-11135000	Weak transcription	Fetal Lung	lung
19	chr6:11122400-11134800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:11122600-11134800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:11122600-11135000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:11123000-11135000	Weak transcription	Hela-S3	cervix
23	chr6:11123000-11135400	Weak transcription	Ovary	ovary
24	chr6:11123600-11134600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:11123600-11134800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:11123600-11135000	Weak transcription	K562	blood
27	chr6:11124200-11134800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:11125000-11134600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:11125000-11134800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:11125200-11134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:11125400-11135000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:11126200-11135000	Weak transcription	Placenta	Placenta
33	chr6:11126400-11134600	Weak transcription	Fetal Intestine Large	intestine
34	chr6:11126800-11134600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:11127400-11134800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:11127400-11135000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:11127400-11135000	Weak transcription	Osteobl	bone
38	chr6:11127400-11135200	Weak transcription	NH-A	brain
39	chr6:11127400-11139800	Weak transcription	Pancreas	Pancrea
40	chr6:11127400-11146000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:11127600-11135000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr6:11127600-11135200	Weak transcription	Aorta	Aorta
43	chr6:11127600-11135400	Weak transcription	Esophagus	oesophagus
44	chr6:11127600-11136400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:11127600-11140400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:11127600-11143800	Weak transcription	Stomach Mucosa	stomach
47	chr6:11127600-11145600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:11127800-11134800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:11127800-11134800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:11128200-11134600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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