Variant report

Variant	rs12212683
Chromosome Location	chr6:11150614-11150615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484446	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10484448	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946967	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10946968	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10947002	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11751998	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11759939	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190970	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12193702	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194681	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199551	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12200717	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12200932	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12205389	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12211539	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213689	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215910	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711180	0.88[EUR][1000 genomes]
rs6456846	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11129000-11154200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:11136000-11154400	Weak transcription	Left Ventricle	heart
3	chr6:11136600-11154400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:11137800-11154000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:11145000-11172800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:11145200-11150800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:11146000-11154000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:11146800-11154200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:11147000-11153800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:11147200-11151200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:11147200-11151200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:11147400-11154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:11148600-11154200	Weak transcription	Right Atrium	heart
14	chr6:11150200-11154200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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