Variant report

Variant	rs10946967
Chromosome Location	chr6:11123698-11123699
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484446	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484448	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10946968	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947002	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11751998	0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759939	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12190970	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193702	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12194681	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199551	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12200717	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205389	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211539	0.82[CEU][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212683	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213689	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711180	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6456846	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906952	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11095600-11135200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:11096800-11127200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:11101600-11134800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:11103200-11127000	Weak transcription	Esophagus	oesophagus
5	chr6:11112400-11124400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:11112400-11128400	Weak transcription	Spleen	Spleen
7	chr6:11112400-11134600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:11112400-11135000	Weak transcription	Primary T cells from cord blood	blood
9	chr6:11112400-11135400	Weak transcription	Thymus	Thymus
10	chr6:11112400-11137200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:11112600-11124600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:11112600-11127000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:11112600-11128200	Weak transcription	Lung	lung
14	chr6:11112600-11134600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:11112600-11134600	Weak transcription	Dnd41	blood
16	chr6:11112600-11135000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:11116600-11144000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:11117000-11126600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:11117200-11127000	Weak transcription	Liver	Liver
20	chr6:11120400-11123800	Enhancers	Brain Hippocampus Middle	brain
21	chr6:11120600-11123800	Enhancers	Brain Substantia Nigra	brain
22	chr6:11120600-11127000	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:11120600-11134600	Weak transcription	Fetal Thymus	thymus
24	chr6:11120600-11136800	Weak transcription	Brain Germinal Matrix	brain
25	chr6:11120800-11127000	Weak transcription	Fetal Intestine Small	intestine
26	chr6:11120800-11134600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:11121000-11127000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:11121000-11127000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:11121000-11130000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:11121200-11127000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:11121200-11129800	Weak transcription	NHDF-Ad	bronchial
32	chr6:11121200-11130000	Weak transcription	GM12878-XiMat	blood
33	chr6:11121200-11134800	Weak transcription	HMEC	breast
34	chr6:11121200-11135200	Weak transcription	HSMMtube	muscle
35	chr6:11121200-11136800	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:11121400-11127000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:11121400-11130000	Weak transcription	NHEK	skin
38	chr6:11121400-11130200	Weak transcription	HUVEC	blood vessel
39	chr6:11121400-11135000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:11121600-11127000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:11121600-11127000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:11121600-11128000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:11121600-11135000	Weak transcription	Fetal Lung	lung
44	chr6:11121800-11123800	Enhancers	Brain Angular Gyrus	brain
45	chr6:11121800-11128200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:11122400-11126800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:11122400-11127000	Weak transcription	Fetal Stomach	stomach
48	chr6:11122400-11128600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:11122400-11134800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:11122600-11126800	Weak transcription	Muscle Satellite Cultured Cells	--

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