Variant report

Variant	rs12215910
Chromosome Location	chr6:11098960-11098961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11093426..11096790-chr6:11098182..11104321,7	MCF-7	breast:
2	chr6:11097080..11099799-chr6:11233004..11235135,2	K562	blood:
3	chr6:11092888..11095304-chr6:11097725..11099904,2	K562	blood:

Variant related genes	Relation type
ENSG00000224531	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484446	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484448	0.88[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10946967	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946968	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947002	0.81[ASN][1000 genomes]
rs11751998	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11759939	0.81[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12190970	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193702	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12194681	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199551	0.81[ASN][1000 genomes]
rs12200717	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205389	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211539	0.82[CEU][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212683	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213689	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711180	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6456846	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906952	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11095200-11103000	Weak transcription	Gastric	stomach
2	chr6:11095200-11104400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:11095200-11109600	Weak transcription	Lung	lung
4	chr6:11095200-11111200	Weak transcription	Left Ventricle	heart
5	chr6:11095200-11111800	Weak transcription	Spleen	Spleen
6	chr6:11095200-11122000	Weak transcription	Ovary	ovary
7	chr6:11095600-11101400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:11095600-11135200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:11095800-11108400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:11095800-11111600	Weak transcription	Right Atrium	heart
11	chr6:11095800-11112000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:11096000-11101400	Weak transcription	Psoas Muscle	Psoas
13	chr6:11096200-11099000	Weak transcription	NH-A	brain
14	chr6:11096200-11100200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:11096400-11101800	Weak transcription	Fetal Stomach	stomach
16	chr6:11096400-11105800	Weak transcription	HSMM	muscle
17	chr6:11096600-11099200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:11096600-11099600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:11096600-11099800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:11096600-11100200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:11096600-11101000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:11096600-11101200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:11096600-11102400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:11096600-11107400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:11096600-11111600	Weak transcription	Fetal Intestine Large	intestine
26	chr6:11096600-11120600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:11096800-11099000	Enhancers	HepG2	liver
28	chr6:11096800-11099400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:11096800-11099600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:11096800-11099800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:11096800-11099800	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:11096800-11100000	Weak transcription	Brain Germinal Matrix	brain
33	chr6:11096800-11100000	Weak transcription	Fetal Brain Female	brain
34	chr6:11096800-11100200	Weak transcription	Adipose Nuclei	Adipose
35	chr6:11096800-11100400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:11096800-11100600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:11096800-11101400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr6:11096800-11101400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:11096800-11101400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:11096800-11101400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:11096800-11101600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:11096800-11102400	Weak transcription	HMEC	breast
43	chr6:11096800-11102800	Weak transcription	Thymus	Thymus
44	chr6:11096800-11103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:11096800-11103200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:11096800-11104200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:11096800-11104400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:11096800-11106000	Weak transcription	Right Ventricle	heart
49	chr6:11096800-11106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr6:11096800-11106400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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