Variant report

Variant	rs6456846
Chromosome Location	chr6:11102202-11102203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11093426..11096790-chr6:11098182..11104321,7	MCF-7	breast:
2	chr6:11101299..11103678-chr6:11104382..11107113,3	K562	blood:
3	chr6:10954941..10957593-chr6:11101269..11103151,2	K562	blood:

Variant related genes	Relation type
ENSG00000224531	Chromatin interaction
ENSG00000244476	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484446	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484448	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10946967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946968	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947002	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11751998	0.87[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11759939	0.80[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12190970	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193702	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12194681	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199551	0.81[ASN][1000 genomes]
rs12200717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205389	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211539	0.81[CEU][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12212683	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213689	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12215910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711180	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6906952	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11095200-11103000	Weak transcription	Gastric	stomach
2	chr6:11095200-11104400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:11095200-11109600	Weak transcription	Lung	lung
4	chr6:11095200-11111200	Weak transcription	Left Ventricle	heart
5	chr6:11095200-11111800	Weak transcription	Spleen	Spleen
6	chr6:11095200-11122000	Weak transcription	Ovary	ovary
7	chr6:11095600-11135200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:11095800-11108400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:11095800-11111600	Weak transcription	Right Atrium	heart
10	chr6:11095800-11112000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:11096400-11105800	Weak transcription	HSMM	muscle
12	chr6:11096600-11102400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:11096600-11107400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:11096600-11111600	Weak transcription	Fetal Intestine Large	intestine
15	chr6:11096600-11120600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:11096800-11102400	Weak transcription	HMEC	breast
17	chr6:11096800-11102800	Weak transcription	Thymus	Thymus
18	chr6:11096800-11103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:11096800-11103200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:11096800-11104200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:11096800-11104400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:11096800-11106000	Weak transcription	Right Ventricle	heart
23	chr6:11096800-11106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:11096800-11106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:11096800-11107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:11096800-11108400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:11096800-11110400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:11096800-11110400	Weak transcription	Placenta	Placenta
29	chr6:11096800-11110400	Weak transcription	NHDF-Ad	bronchial
30	chr6:11096800-11110600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:11096800-11111200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:11096800-11111600	Weak transcription	Primary T cells from cord blood	blood
33	chr6:11096800-11111800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:11096800-11115000	Weak transcription	NHEK	skin
35	chr6:11096800-11116600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:11096800-11127200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:11098600-11103000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:11098600-11104200	Weak transcription	Hela-S3	cervix
39	chr6:11098600-11110200	Weak transcription	K562	blood
40	chr6:11099000-11102800	Weak transcription	Fetal Intestine Small	intestine
41	chr6:11099000-11103400	Weak transcription	HepG2	liver
42	chr6:11099800-11103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:11100200-11106800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:11100800-11102600	Weak transcription	Dnd41	blood
45	chr6:11100800-11103000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:11100800-11103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:11100800-11103800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:11100800-11116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:11101000-11103400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:11101600-11134800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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