Variant report

Variant	rs10484985
Chromosome Location	chr6:54461072-54461073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484990	1.00[JPT][hapmap]
rs10484992	1.00[JPT][hapmap]
rs12194292	1.00[JPT][hapmap]
rs12197613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205262	1.00[JPT][hapmap]
rs12205849	1.00[JPT][hapmap]
rs12216154	1.00[MEX][hapmap]
rs1648216	1.00[JPT][hapmap]
rs243742	0.82[ASN][1000 genomes]
rs243743	0.82[ASN][1000 genomes]
rs541752	0.82[ASN][1000 genomes]
rs653977	0.82[ASN][1000 genomes]
rs925056	1.00[JPT][hapmap]
rs9767142	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54460200-54461600	Enhancers	Osteobl	bone
2	chr6:54460400-54461400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:54460400-54461400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:54460600-54461400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links