Variant report

Variant	rs12197613
Chromosome Location	chr6:54463437-54463438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484990	1.00[JPT][hapmap]
rs10484992	1.00[JPT][hapmap]
rs12194292	1.00[JPT][hapmap]
rs12201939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205262	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs12205849	1.00[JPT][hapmap]
rs1648216	1.00[JPT][hapmap]
rs2047827	0.82[CEU][hapmap]
rs243742	0.82[ASN][1000 genomes]
rs243743	0.82[ASN][1000 genomes]
rs541752	0.82[ASN][1000 genomes]
rs653977	0.82[ASN][1000 genomes]
rs925056	1.00[JPT][hapmap]
rs9767142	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54461600-54463800	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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