Variant report

Variant	rs10485020
Chromosome Location	chr6:72376249-72376250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1076994	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10942960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12189736	0.81[CEU][hapmap];1.00[AFR][1000 genomes]
rs12192131	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12194008	1.00[AFR][1000 genomes]
rs12198794	1.00[CEU][hapmap]
rs12203374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12207658	0.81[CEU][hapmap];1.00[AFR][1000 genomes]
rs12209719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12210828	1.00[AFR][1000 genomes]
rs12212596	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12212719	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12212834	1.00[AFR][1000 genomes]
rs12214266	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12214683	0.81[CEU][hapmap];1.00[AFR][1000 genomes]
rs12214970	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12215019	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12524994	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12526974	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12527016	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13196378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13205327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13220610	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17453537	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17550741	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34080587	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35128468	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35240683	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35345970	1.00[AFR][1000 genomes]
rs36088985	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3912534	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62404299	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62407670	1.00[AFR][1000 genomes]
rs67651127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902698	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6903314	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6927741	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71555493	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7775176	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs829273	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72372000-72383200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:72375400-72376400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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