Variant report

Variant	rs36088985
Chromosome Location	chr6:72385084-72385085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10485020	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1076994	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10942960	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12189736	1.00[AFR][1000 genomes]
rs12192131	1.00[AFR][1000 genomes]
rs12194008	1.00[AFR][1000 genomes]
rs12203374	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12207658	1.00[AFR][1000 genomes]
rs12209719	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12210828	1.00[AFR][1000 genomes]
rs12212596	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12212719	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12212834	1.00[AFR][1000 genomes]
rs12214266	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12214683	1.00[AFR][1000 genomes]
rs12214970	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12215019	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12524994	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12526974	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12527016	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13196378	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13205327	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13220610	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17453537	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17550741	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34080587	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35128468	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35240683	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35345970	1.00[AFR][1000 genomes]
rs3912534	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62404299	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62407670	1.00[AFR][1000 genomes]
rs67651127	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6902698	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6903314	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6927741	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71555493	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7775176	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs829273	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72381800-72385400	Enhancers	Fetal Intestine Large	intestine
2	chr6:72383200-72385400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:72383600-72385400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:72384600-72385600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:72384800-72385400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:72384800-72385600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:72384800-72385800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:72385000-72385200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:72385000-72385600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:72385000-72385800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:72385000-72386200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:72385000-72388000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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