Variant report

Variant	rs12207658
Chromosome Location	chr6:72292538-72292539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr6:72292423-72292784	HL-60	blood:	n/a	chr6:72292570-72292579 chr6:72292568-72292581 chr6:72292567-72292580 chr6:72292571-72292578
2	SPI1	chr6:72292362-72292813	HL-60	blood:	n/a	chr6:72292570-72292579 chr6:72292568-72292581 chr6:72292567-72292580 chr6:72292571-72292578

Variant related genes	Relation type
KRT19P1	TF binding region
ENSG00000211530	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10485020	1.00[AFR][1000 genomes]
rs1076994	1.00[AFR][1000 genomes]
rs10942960	1.00[AFR][1000 genomes]
rs12189736	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12192131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12194008	1.00[AFR][1000 genomes]
rs12198794	0.81[CEU][hapmap]
rs12203374	1.00[AFR][1000 genomes]
rs12209719	1.00[AFR][1000 genomes]
rs12210828	1.00[AFR][1000 genomes]
rs12212596	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12212719	0.85[AMR][1000 genomes]
rs12212834	1.00[AFR][1000 genomes]
rs12214266	0.85[AMR][1000 genomes]
rs12214683	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12524994	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12526974	0.85[AMR][1000 genomes]
rs12527016	0.85[AMR][1000 genomes]
rs13196378	1.00[AFR][1000 genomes]
rs13205327	1.00[AFR][1000 genomes]
rs13220610	0.85[AMR][1000 genomes]
rs17453537	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17550741	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34080587	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35128468	0.85[AMR][1000 genomes]
rs35240683	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35345970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36088985	1.00[AFR][1000 genomes]
rs3912534	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62404299	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62407670	1.00[AFR][1000 genomes]
rs67651127	1.00[AFR][1000 genomes]
rs6902698	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6903314	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6927741	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs71555493	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7775176	0.85[AMR][1000 genomes]
rs829273	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72289400-72295400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links