Variant report
| Variant | rs12210828 |
|---|---|
| Chromosome Location | chr6:72290462-72290463 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10485020 | 1.00[AFR][1000 genomes] |
| rs1076994 | 1.00[AFR][1000 genomes] |
| rs10942960 | 1.00[AFR][1000 genomes] |
| rs12189736 | 1.00[AFR][1000 genomes] |
| rs12192131 | 1.00[AFR][1000 genomes] |
| rs12194008 | 1.00[AFR][1000 genomes] |
| rs12203374 | 1.00[AFR][1000 genomes] |
| rs12207658 | 1.00[AFR][1000 genomes] |
| rs12209719 | 1.00[AFR][1000 genomes] |
| rs12212550 | 1.00[CEU][hapmap] |
| rs12212596 | 1.00[AFR][1000 genomes] |
| rs12212834 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12214683 | 1.00[AFR][1000 genomes] |
| rs12524994 | 1.00[AFR][1000 genomes] |
| rs13196378 | 1.00[AFR][1000 genomes] |
| rs13205327 | 1.00[AFR][1000 genomes] |
| rs17453537 | 1.00[AFR][1000 genomes] |
| rs17550741 | 1.00[AFR][1000 genomes] |
| rs34080587 | 1.00[AFR][1000 genomes] |
| rs35240683 | 1.00[AFR][1000 genomes] |
| rs35345970 | 1.00[AFR][1000 genomes] |
| rs36088985 | 1.00[AFR][1000 genomes] |
| rs3912534 | 1.00[AFR][1000 genomes] |
| rs62404299 | 1.00[AFR][1000 genomes] |
| rs62407670 | 1.00[AFR][1000 genomes] |
| rs67651127 | 1.00[AFR][1000 genomes] |
| rs6902698 | 1.00[AFR][1000 genomes] |
| rs6903314 | 1.00[AFR][1000 genomes] |
| rs6927741 | 1.00[AFR][1000 genomes] |
| rs71555493 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830685 | chr6:72244007-72410757 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3442082 | chr6:72287826-72291575 | Enhancers Weak transcription | TF binding regionCpG island | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3359534 | chr6:72287829-72291581 | Enhancers Weak transcription | TF binding regionCpG island | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:72289400-72295400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
