Variant report

Variant	rs6927741
Chromosome Location	chr6:72312534-72312535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72311429..72313246-chr6:72315498..72317148,2	K562	blood:
2	chr6:72310354..72312886-chr6:72319784..72322703,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10485020	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1076994	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10942960	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12189736	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12192131	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12194008	1.00[AFR][1000 genomes]
rs12203374	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12207658	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12209719	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12210828	1.00[AFR][1000 genomes]
rs12212596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12212719	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12212834	1.00[AFR][1000 genomes]
rs12214266	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12214683	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12214970	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12215019	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12524994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12526974	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12527016	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13196378	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13205327	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13220610	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17453537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17550741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34080587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35128468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35240683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35345970	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs36088985	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3912534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62404299	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62407670	1.00[AFR][1000 genomes]
rs67651127	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6902698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71555493	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7775176	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829273	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72311400-72313000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:72311600-72313400	Enhancers	HMEC	breast
3	chr6:72311600-72313800	Enhancers	Osteobl	bone
4	chr6:72311800-72313400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:72311800-72313800	Enhancers	HSMM	muscle
6	chr6:72311800-72313800	Enhancers	NH-A	brain
7	chr6:72312000-72313200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:72312200-72312800	Enhancers	Fetal Lung	lung
9	chr6:72312200-72313000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:72312200-72313000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:72312200-72313200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:72312400-72312800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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