Variant report

Variant	rs10485174
Chromosome Location	chr6:4068525-4068526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4063965..4066148-chr6:4066336..4068654,2	MCF-7	breast:
2	chr6:4067254..4070253-chr6:4071525..4075483,4	K562	blood:
3	chr6:4063481..4065487-chr6:4065794..4068948,3	K562	blood:
4	chr6:4066739..4069378-chr6:4083684..4085264,2	MCF-7	breast:
5	chr6:4067620..4070166-chr6:4130566..4132778,2	K562	blood:
6	chr6:4055133..4057638-chr6:4068156..4070226,2	K562	blood:
7	chr6:4063868..4065487-chr6:4067448..4070082,2	K562	blood:

Variant related genes	Relation type
ENSG00000112739	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17133225	1.00[AMR][1000 genomes]
rs17137618	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6927631	1.00[AMR][1000 genomes]
rs6937770	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343809	1.00[AMR][1000 genomes]
rs73353381	1.00[AMR][1000 genomes]
rs9328223	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv462615	chr6:4052383-4096678	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv600860	chr6:4052383-4096678	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4023400-4071600	Weak transcription	Stomach Mucosa	stomach
2	chr6:4058200-4075000	Weak transcription	Small Intestine	intestine
3	chr6:4061600-4068600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:4063000-4073000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:4063400-4078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:4063600-4072000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:4063800-4068600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:4063800-4073200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:4064000-4068800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:4064000-4077600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:4065200-4069400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:4065200-4077400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:4065600-4069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:4065800-4068600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:4065800-4069000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:4065800-4069200	Weak transcription	K562	blood
17	chr6:4065800-4069600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:4066000-4068600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:4066000-4071000	Weak transcription	Gastric	stomach
20	chr6:4066000-4071200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:4066000-4077400	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:4066200-4069200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:4066200-4069200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:4066200-4073000	Weak transcription	HUVEC	blood vessel
25	chr6:4066200-4077400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:4066400-4068600	Enhancers	HepG2	liver
27	chr6:4066400-4068800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:4066400-4069000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:4066400-4069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:4066400-4077200	Weak transcription	Adipose Nuclei	Adipose
31	chr6:4066400-4077400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:4066600-4069200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:4066600-4070400	Weak transcription	Fetal Brain Female	brain
34	chr6:4066600-4072400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:4066600-4077400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:4066800-4068800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:4066800-4069000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:4066800-4069000	Weak transcription	Fetal Stomach	stomach
39	chr6:4066800-4069200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:4066800-4071000	Weak transcription	Pancreas	Pancrea
41	chr6:4066800-4073200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:4066800-4073200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:4066800-4079600	Weak transcription	NHLF	lung
44	chr6:4067000-4068600	Weak transcription	HSMM	muscle
45	chr6:4067000-4068800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:4067000-4069000	Weak transcription	Primary T cells from cord blood	blood
47	chr6:4067000-4069200	Weak transcription	Primary B cells from cord blood	blood
48	chr6:4067000-4069200	Weak transcription	Fetal Thymus	thymus
49	chr6:4067000-4069200	Weak transcription	Left Ventricle	heart
50	chr6:4067000-4082400	Weak transcription	Brain Germinal Matrix	brain

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