Variant report

Variant	rs73343809
Chromosome Location	chr6:3888328-3888329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:3885565..3889777-chr6:3889921..3893040,4	K562	blood:
2	chr6:3748208..3748986-chr6:3887304..3888731,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10485174	1.00[AMR][1000 genomes]
rs11759789	1.00[AMR][1000 genomes]
rs17133225	1.00[AMR][1000 genomes]
rs17137618	1.00[AMR][1000 genomes]
rs6927631	1.00[AMR][1000 genomes]
rs6937770	1.00[AMR][1000 genomes]
rs6938759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1024414	chr6:3862744-3898734	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3878600-3888800	Weak transcription	Pancreas	Pancrea
2	chr6:3881200-3889400	Enhancers	HepG2	liver
3	chr6:3882400-3889600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:3884800-3891600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:3884800-3894200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:3884800-3902600	Weak transcription	Aorta	Aorta
7	chr6:3885000-3888800	Weak transcription	Osteobl	bone
8	chr6:3885200-3895000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:3885600-3888600	Enhancers	A549	lung
10	chr6:3885800-3888400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:3886800-3888800	Enhancers	Liver	Liver
12	chr6:3886800-3889000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:3886800-3889400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:3887200-3888400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:3887200-3889400	Enhancers	Stomach Mucosa	stomach
16	chr6:3887400-3889000	Enhancers	Fetal Muscle Leg	muscle
17	chr6:3887400-3889000	Enhancers	Left Ventricle	heart
18	chr6:3887400-3889400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:3887400-3889400	Enhancers	Fetal Intestine Small	intestine
20	chr6:3887400-3889600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:3887400-3889800	Enhancers	Adipose Nuclei	Adipose
22	chr6:3887600-3888600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:3887600-3888600	Enhancers	Placenta	Placenta
24	chr6:3887600-3889000	Enhancers	Fetal Muscle Trunk	muscle
25	chr6:3887600-3889000	Enhancers	Right Ventricle	heart
26	chr6:3887600-3889400	Enhancers	Fetal Intestine Large	intestine
27	chr6:3887600-3889400	Enhancers	Psoas Muscle	Psoas
28	chr6:3887600-3889600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:3887600-3889600	Enhancers	NHDF-Ad	bronchial
30	chr6:3887800-3889400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:3887800-3889600	Enhancers	Hela-S3	cervix
32	chr6:3887800-3894200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:3888000-3888600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr6:3888000-3889000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:3888000-3889000	Enhancers	Gastric	stomach
36	chr6:3888000-3889000	Enhancers	Lung	lung
37	chr6:3888000-3889000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:3888000-3891200	Weak transcription	Fetal Heart	heart
39	chr6:3888200-3888800	Enhancers	Right Atrium	heart
40	chr6:3888200-3888800	Enhancers	Stomach Smooth Muscle	stomach
41	chr6:3888200-3889000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:3888200-3889000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr6:3888200-3891200	Enhancers	Brain Germinal Matrix	brain

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