Variant report

Variant	rs17137618
Chromosome Location	chr6:4069378-4069379
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4067254..4070253-chr6:4071525..4075483,4	K562	blood:
2	chr6:4066739..4069378-chr6:4083684..4085264,2	MCF-7	breast:
3	chr6:4067620..4070166-chr6:4130566..4132778,2	K562	blood:
4	chr6:4055133..4057638-chr6:4068156..4070226,2	K562	blood:
5	chr6:4063868..4065487-chr6:4067448..4070082,2	K562	blood:

Variant related genes	Relation type
ENSG00000112739	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10485174	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133225	1.00[AMR][1000 genomes]
rs6927631	1.00[AMR][1000 genomes]
rs6937770	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343809	1.00[AMR][1000 genomes]
rs73353381	1.00[AMR][1000 genomes]
rs9328223	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv462615	chr6:4052383-4096678	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv600860	chr6:4052383-4096678	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4023400-4071600	Weak transcription	Stomach Mucosa	stomach
2	chr6:4058200-4075000	Weak transcription	Small Intestine	intestine
3	chr6:4063000-4073000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:4063400-4078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:4063600-4072000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:4063800-4073200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:4064000-4077600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:4065200-4069400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:4065200-4077400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:4065800-4069600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:4066000-4071000	Weak transcription	Gastric	stomach
12	chr6:4066000-4071200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:4066000-4077400	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:4066200-4073000	Weak transcription	HUVEC	blood vessel
15	chr6:4066200-4077400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:4066400-4069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:4066400-4077200	Weak transcription	Adipose Nuclei	Adipose
18	chr6:4066400-4077400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:4066600-4070400	Weak transcription	Fetal Brain Female	brain
20	chr6:4066600-4072400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:4066600-4077400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:4066800-4071000	Weak transcription	Pancreas	Pancrea
23	chr6:4066800-4073200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:4066800-4073200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:4066800-4079600	Weak transcription	NHLF	lung
26	chr6:4067000-4082400	Weak transcription	Brain Germinal Matrix	brain
27	chr6:4068400-4069800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:4068600-4074800	Weak transcription	HepG2	liver
29	chr6:4069000-4071400	Weak transcription	Fetal Intestine Small	intestine
30	chr6:4069200-4069800	Enhancers	K562	blood

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