Variant report

Variant	rs17133225
Chromosome Location	chr6:4065003-4065004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:4061684..4064078-chr6:4064643..4066598,2	MCF-7	breast:
2	chr6:4064462..4067328-chr6:4134319..4137285,4	K562	blood:
3	chr6:4038415..4040524-chr6:4062857..4065779,3	K562	blood:
4	chr6:4063481..4065487-chr6:4065794..4068948,3	K562	blood:
5	chr6:4064462..4068135-chr6:4134400..4138606,5	K562	blood:
6	chr6:4063923..4066758-chr6:4130890..4132765,2	K562	blood:
7	chr6:4063965..4066148-chr6:4066336..4068654,2	MCF-7	breast:
8	chr6:4063868..4065487-chr6:4067448..4070082,2	K562	blood:
9	chr6:4049234..4051295-chr6:4063224..4065209,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112739	Chromatin interaction
ENSG00000198721	Chromatin interaction
ENSG00000145975	Chromatin interaction
ENSG00000234817	Chromatin interaction
ENSG00000254821	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10485174	1.00[AMR][1000 genomes]
rs17137618	1.00[AMR][1000 genomes]
rs6927631	1.00[AMR][1000 genomes]
rs6937770	1.00[AMR][1000 genomes]
rs6938759	1.00[AMR][1000 genomes]
rs73343809	1.00[AMR][1000 genomes]
rs73353381	1.00[AMR][1000 genomes]
rs9328223	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv462615	chr6:4052383-4096678	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv600860	chr6:4052383-4096678	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4023400-4071600	Weak transcription	Stomach Mucosa	stomach
2	chr6:4023800-4067000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:4030600-4065800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:4030800-4066600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:4031000-4066400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:4031200-4066600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:4034000-4066800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:4035800-4066000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:4035800-4066000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr6:4035800-4066200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:4036000-4066600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:4036000-4066600	Strong transcription	Duodenum Mucosa	Duodenum
13	chr6:4037200-4066200	Strong transcription	Liver	Liver
14	chr6:4037400-4065800	Strong transcription	Placenta	Placenta
15	chr6:4037600-4066200	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr6:4037600-4066400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:4038800-4066000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:4040800-4065400	Strong transcription	GM12878-XiMat	blood
19	chr6:4042000-4066400	Strong transcription	Adipose Nuclei	Adipose
20	chr6:4048200-4065800	Strong transcription	Fetal Muscle Leg	muscle
21	chr6:4052000-4067000	Strong transcription	Primary B cells from cord blood	blood
22	chr6:4052400-4067400	Weak transcription	Psoas Muscle	Psoas
23	chr6:4056000-4065600	Strong transcription	Fetal Kidney	kidney
24	chr6:4056200-4066600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:4056400-4066400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:4056600-4065200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:4056600-4065800	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:4056600-4066200	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:4056600-4066800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:4056800-4065200	Strong transcription	Brain Substantia Nigra	brain
31	chr6:4058200-4075000	Weak transcription	Small Intestine	intestine
32	chr6:4058400-4065600	Weak transcription	Gastric	stomach
33	chr6:4059000-4066400	Strong transcription	Stomach Smooth Muscle	stomach
34	chr6:4059800-4065800	Strong transcription	K562	blood
35	chr6:4059800-4066200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:4059800-4066200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:4059800-4066200	Strong transcription	Hela-S3	cervix
38	chr6:4060000-4066400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:4060000-4067000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:4060200-4065400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:4060200-4066200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr6:4060200-4066200	Strong transcription	HUVEC	blood vessel
43	chr6:4060200-4066400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:4060200-4067000	Strong transcription	Fetal Thymus	thymus
45	chr6:4060200-4067200	Weak transcription	Fetal Intestine Small	intestine
46	chr6:4060400-4065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:4060400-4066000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:4060400-4066000	Strong transcription	A549	lung
49	chr6:4060400-4066400	Weak transcription	Pancreas	Pancrea
50	chr6:4060400-4066600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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