Variant report

Variant	rs10487187
Chromosome Location	chr7:103801444-103801445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:103801114..103802844-chr7:103807338..103808985,2	K562	blood:
2	chr7:103165602..103166287-chr7:103800636..103801478,2	K562	blood:
3	chr7:103213715..103214700-chr7:103800606..103801627,5	K562	blood:
4	chr7:103309641..103312329-chr7:103801017..103803175,2	K562	blood:
5	chr7:103628784..103631048-chr7:103800066..103802950,2	K562	blood:
6	chr7:103629548..103631845-chr7:103800159..103802950,2	K562	blood:
7	chr7:103794161..103796658-chr7:103800884..103802948,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10487186	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10487189	0.86[ASW][hapmap];1.00[MEX][hapmap]
rs17133236	1.00[MEX][hapmap]
rs17133243	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159460	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159497	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159520	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159657	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159689	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159701	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159713	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159723	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159768	0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159771	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17160197	1.00[AMR][1000 genomes]
rs1861448	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28616246	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3079580	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56821345	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58837307	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60431768	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60849630	0.94[AFR][1000 genomes]
rs6946744	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951205	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7458812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781808	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7794585	0.84[ASW][hapmap];1.00[MEX][hapmap]
rs7805361	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7805635	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7807929	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs872861	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
6	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
7	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
8	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
9	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
10	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:103767200-103829200	Weak transcription	Gastric	stomach
12	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
13	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
14	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
15	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:103771800-103820000	Weak transcription	NHEK	skin
18	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr7:103774600-103803600	Weak transcription	Ovary	ovary
20	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:103775200-103829200	Weak transcription	Lung	lung
22	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
23	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:103776800-103803800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:103777000-103803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:103777000-103803800	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:103777000-103804600	Weak transcription	Colonic Mucosa	Colon
30	chr7:103777000-103804800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:103777000-103805200	Weak transcription	Placenta	Placenta
32	chr7:103777000-103819600	Weak transcription	Fetal Brain Female	brain
33	chr7:103777200-103805000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:103777200-103819400	Weak transcription	GM12878-XiMat	blood
35	chr7:103777400-103801600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr7:103777400-103803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:103777400-103805000	Weak transcription	HMEC	breast
38	chr7:103777400-103819800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr7:103778200-103802800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:103778200-103802800	Weak transcription	Adipose Nuclei	Adipose
41	chr7:103778200-103803600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:103778200-103803600	Weak transcription	Thymus	Thymus
43	chr7:103778400-103801800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:103778400-103802600	Weak transcription	Fetal Intestine Large	intestine
45	chr7:103778600-103802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:103778800-103801600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr7:103778800-103803600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:103778800-103804600	Weak transcription	Osteobl	bone
49	chr7:103779000-103802800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr7:103779000-103806800	Weak transcription	NH-A	brain

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