Variant report

Variant	rs7805635
Chromosome Location	chr7:103829312-103829313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103828241..103832617-chr7:103845942..103850050,7	K562	blood:
2	chr7:103826587..103829336-chr7:103841216..103843346,2	K562	blood:
3	chr7:103820850..103822660-chr7:103828536..103831512,3	K562	blood:

Variant related genes	Relation type
ENSG00000164815	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10487186	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10487187	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17133243	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159460	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159497	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159520	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159629	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159657	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159689	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159701	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159713	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159723	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17159768	0.89[AFR][1000 genomes]
rs17159771	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17160197	0.83[AMR][1000 genomes]
rs1861448	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28616246	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3079580	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56821345	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58837307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60431768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60849630	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6946744	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6950326	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6951205	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7458812	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7781808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807929	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs872861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv527105	chr7:103826002-103836132	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
3	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
4	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
5	chr7:103796400-103843600	Weak transcription	Fetal Brain Male	brain
6	chr7:103797200-103847000	Weak transcription	Fetal Heart	heart
7	chr7:103798400-103829600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:103800800-103829600	Weak transcription	NHLF	lung
9	chr7:103802200-103838600	Weak transcription	Psoas Muscle	Psoas
10	chr7:103809400-103838200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:103815400-103839200	Weak transcription	Colonic Mucosa	Colon
12	chr7:103815600-103838400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:103816000-103846200	Weak transcription	Stomach Mucosa	stomach
14	chr7:103816800-103836600	Weak transcription	Brain Substantia Nigra	brain
15	chr7:103818600-103832400	Strong transcription	Liver	Liver
16	chr7:103818600-103839600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:103818800-103832800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr7:103819000-103832400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:103819000-103838400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:103819200-103830800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:103819600-103830400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr7:103820400-103832400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:103820600-103829800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr7:103821800-103839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:103822000-103845400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:103822200-103836400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr7:103822400-103830400	Strong transcription	HepG2	liver
28	chr7:103822600-103830400	Strong transcription	Fetal Thymus	thymus
29	chr7:103822600-103839600	Strong transcription	K562	blood
30	chr7:103823000-103829600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr7:103823000-103832600	Strong transcription	Dnd41	blood
32	chr7:103823000-103839200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:103823000-103839200	Weak transcription	Brain Hippocampus Middle	brain
34	chr7:103823200-103829600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:103823200-103829800	Strong transcription	A549	lung
36	chr7:103823200-103831600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:103823600-103830800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:103823800-103829400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr7:103823800-103829800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:103823800-103838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:103823800-103839200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:103823800-103839200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr7:103823800-103839200	Weak transcription	Esophagus	oesophagus
44	chr7:103824000-103830600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr7:103824000-103832600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:103824200-103829800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr7:103824200-103830400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:103824200-103835400	Weak transcription	NHEK	skin
49	chr7:103824200-103838400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr7:103824400-103829600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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