Variant report
Variant | rs10504840 |
---|---|
Chromosome Location | chr8:89426999-89427000 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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(count:3 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10100170 | 0.83[ASN][1000 genomes] |
rs1012116 | 0.90[ASN][1000 genomes] |
rs10504845 | 0.84[CHD][hapmap] |
rs1094195 | 1.00[ASN][1000 genomes] |
rs1094196 | 1.00[ASN][1000 genomes] |
rs1094198 | 1.00[ASN][1000 genomes] |
rs11774961 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs13250349 | 0.88[EUR][1000 genomes] |
rs13258321 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13261175 | 0.83[ASN][1000 genomes] |
rs13262875 | 0.83[ASN][1000 genomes] |
rs13271448 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13279451 | 1.00[ASN][1000 genomes] |
rs1394511 | 0.83[ASN][1000 genomes] |
rs1504798 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1504799 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1504801 | 0.83[ASN][1000 genomes] |
rs16882957 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1700143 | 0.94[ASN][1000 genomes] |
rs1825876 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1910730 | 0.83[ASN][1000 genomes] |
rs34051963 | 0.83[ASN][1000 genomes] |
rs34583542 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35660410 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs35795205 | 0.96[ASN][1000 genomes] |
rs4369037 | 0.90[ASN][1000 genomes] |
rs4461943 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4497011 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4604492 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4961095 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs56231945 | 0.83[ASN][1000 genomes] |
rs58255283 | 0.83[ASN][1000 genomes] |
rs58418586 | 0.83[ASN][1000 genomes] |
rs58644813 | 0.83[ASN][1000 genomes] |
rs6469364 | 0.83[ASN][1000 genomes] |
rs6469372 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs67312178 | 0.83[ASN][1000 genomes] |
rs6984041 | 0.83[ASN][1000 genomes] |
rs6989402 | 0.83[ASN][1000 genomes] |
rs6992417 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
rs6994283 | 0.83[ASN][1000 genomes] |
rs7002751 | 0.83[ASN][1000 genomes] |
rs7003288 | 0.82[JPT][hapmap] |
rs7003388 | 0.83[ASN][1000 genomes] |
rs7004601 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7006944 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs73291155 | 1.00[ASN][1000 genomes] |
rs7820710 | 1.00[ASN][1000 genomes] |
rs7823223 | 0.83[ASN][1000 genomes] |
rs821101 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs821112 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs821113 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs821115 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1029898 | chr8:88837956-89606641 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv1030028 | chr8:89060085-89733470 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv1019111 | chr8:89186908-89475460 | Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv891171 | chr8:89342944-89439469 | Enhancers Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv1019671 | chr8:89393818-89443392 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv1029978 | chr8:89396644-89443392 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:89426600-89427000 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
2 | chr8:89426600-89427000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
3 | chr8:89426600-89427000 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
4 | chr8:89426600-89427200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
5 | chr8:89426600-89427200 | Enhancers | iPS-20b Cell Line | embryonic stem cell |