Variant report
Variant | rs4604492 |
---|---|
Chromosome Location | chr8:89403130-89403131 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:89397259..89399282-chr8:89402381..89405145,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10100170 | 0.90[ASN][1000 genomes] |
rs1012116 | 0.98[ASN][1000 genomes] |
rs10504840 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1094195 | 0.92[ASN][1000 genomes] |
rs1094196 | 0.92[ASN][1000 genomes] |
rs1094198 | 0.92[ASN][1000 genomes] |
rs11774961 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13250349 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs13258321 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs13261175 | 0.90[ASN][1000 genomes] |
rs13262875 | 0.90[ASN][1000 genomes] |
rs13271448 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs13279451 | 0.92[ASN][1000 genomes] |
rs1394511 | 0.90[ASN][1000 genomes] |
rs1504798 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1504799 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1504801 | 0.90[ASN][1000 genomes] |
rs16882957 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1700143 | 0.87[ASN][1000 genomes] |
rs1825876 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1910730 | 0.90[ASN][1000 genomes] |
rs28787399 | 0.87[ASN][1000 genomes] |
rs34051963 | 0.90[ASN][1000 genomes] |
rs34583542 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs35175011 | 0.87[ASN][1000 genomes] |
rs35660410 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs35795205 | 0.88[ASN][1000 genomes] |
rs4369037 | 0.98[ASN][1000 genomes] |
rs4395935 | 0.83[ASN][1000 genomes] |
rs4461943 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4497011 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4961095 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs56231945 | 0.90[ASN][1000 genomes] |
rs58255283 | 0.90[ASN][1000 genomes] |
rs58418586 | 0.90[ASN][1000 genomes] |
rs58644813 | 0.90[ASN][1000 genomes] |
rs6469364 | 0.90[ASN][1000 genomes] |
rs6469372 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs67312178 | 0.90[ASN][1000 genomes] |
rs6984041 | 0.90[ASN][1000 genomes] |
rs6989402 | 0.90[ASN][1000 genomes] |
rs6994283 | 0.90[ASN][1000 genomes] |
rs7002751 | 0.90[ASN][1000 genomes] |
rs7003388 | 0.90[ASN][1000 genomes] |
rs7004601 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7006944 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs73291155 | 0.92[ASN][1000 genomes] |
rs7820710 | 0.92[ASN][1000 genomes] |
rs7823223 | 0.90[ASN][1000 genomes] |
rs7825672 | 0.87[ASN][1000 genomes] |
rs821101 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs821112 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs821113 | 0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs821115 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1029898 | chr8:88837956-89606641 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv1030028 | chr8:89060085-89733470 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv1019111 | chr8:89186908-89475460 | Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv831386 | chr8:89209788-89403546 | Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv891171 | chr8:89342944-89439469 | Enhancers Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv1019671 | chr8:89393818-89443392 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1029978 | chr8:89396644-89443392 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:89395000-89405400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |