Variant report

Variant	rs1504799
Chromosome Location	chr8:89436950-89436951
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89409309..89411257-chr8:89436132..89438369,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10100170	0.83[ASN][1000 genomes]
rs1012116	0.90[ASN][1000 genomes]
rs10504840	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1094195	1.00[ASN][1000 genomes]
rs1094196	1.00[ASN][1000 genomes]
rs1094198	1.00[ASN][1000 genomes]
rs11774961	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13258321	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261175	0.83[ASN][1000 genomes]
rs13262875	0.83[ASN][1000 genomes]
rs13271448	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279451	1.00[ASN][1000 genomes]
rs1394511	0.83[ASN][1000 genomes]
rs1504798	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504801	0.83[ASN][1000 genomes]
rs16882957	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1700143	0.94[ASN][1000 genomes]
rs1825876	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910730	0.83[ASN][1000 genomes]
rs34051963	0.83[ASN][1000 genomes]
rs34583542	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35660410	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35795205	0.96[ASN][1000 genomes]
rs4369037	0.90[ASN][1000 genomes]
rs4461943	0.83[ASN][1000 genomes]
rs4497011	0.83[ASN][1000 genomes]
rs4604492	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4961095	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56231945	0.83[ASN][1000 genomes]
rs58255283	0.83[ASN][1000 genomes]
rs58418586	0.83[ASN][1000 genomes]
rs58644813	0.83[ASN][1000 genomes]
rs6469364	0.83[ASN][1000 genomes]
rs6469372	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67312178	0.83[ASN][1000 genomes]
rs6984041	0.83[ASN][1000 genomes]
rs6989402	0.83[ASN][1000 genomes]
rs6992417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs6994283	0.83[ASN][1000 genomes]
rs7002751	0.83[ASN][1000 genomes]
rs7003288	1.00[JPT][hapmap]
rs7003388	0.83[ASN][1000 genomes]
rs7003595	1.00[JPT][hapmap]
rs7004601	0.83[ASN][1000 genomes]
rs7006944	0.83[ASN][1000 genomes]
rs73291155	1.00[ASN][1000 genomes]
rs7820710	1.00[ASN][1000 genomes]
rs7823223	0.83[ASN][1000 genomes]
rs821101	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs821112	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs821113	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs821115	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891171	chr8:89342944-89439469	Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1019671	chr8:89393818-89443392	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1029978	chr8:89396644-89443392	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89433000-89437400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:89435200-89437000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:89435200-89437400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:89435200-89438000	Weak transcription	Aorta	Aorta
5	chr8:89436200-89438400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:89436600-89437200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:89436600-89437400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:89436800-89437200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:89436800-89437800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:89436800-89438000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:89436800-89438400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:89436800-89438400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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