Variant report

Variant	rs1700143
Chromosome Location	chr8:89480086-89480087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89478355..89481491-chr8:89481814..89485091,3	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1012116	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10504840	0.94[ASN][1000 genomes]
rs10504857	0.83[EUR][1000 genomes]
rs10504859	0.89[EUR][1000 genomes]
rs1094195	0.99[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1094196	0.99[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1094198	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11774961	0.87[ASN][1000 genomes]
rs13258321	0.94[ASN][1000 genomes]
rs13271448	0.94[ASN][1000 genomes]
rs13271846	0.89[EUR][1000 genomes]
rs13279451	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1504798	0.94[ASN][1000 genomes]
rs1504799	0.94[ASN][1000 genomes]
rs16882957	0.94[ASN][1000 genomes]
rs16884251	0.89[EUR][1000 genomes]
rs16884273	0.89[EUR][1000 genomes]
rs16884286	0.87[EUR][1000 genomes]
rs16884288	0.89[EUR][1000 genomes]
rs16884476	0.83[EUR][1000 genomes]
rs1825876	0.94[ASN][1000 genomes]
rs2129780	0.86[EUR][1000 genomes]
rs34246550	0.83[EUR][1000 genomes]
rs34366260	0.87[EUR][1000 genomes]
rs34583542	0.94[ASN][1000 genomes]
rs34846572	0.89[EUR][1000 genomes]
rs34976712	0.83[EUR][1000 genomes]
rs35367857	0.88[EUR][1000 genomes]
rs35380858	0.83[EUR][1000 genomes]
rs35543348	0.81[EUR][1000 genomes]
rs35660410	0.85[ASN][1000 genomes]
rs35672725	0.83[EUR][1000 genomes]
rs35715471	0.83[EUR][1000 genomes]
rs35768850	0.87[EUR][1000 genomes]
rs35795205	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35871366	0.81[EUR][1000 genomes]
rs36053186	0.83[EUR][1000 genomes]
rs4295707	0.89[EUR][1000 genomes]
rs4369037	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4425798	0.89[EUR][1000 genomes]
rs4604492	0.87[ASN][1000 genomes]
rs4961095	0.85[ASN][1000 genomes]
rs57311533	0.83[EUR][1000 genomes]
rs58035549	0.88[EUR][1000 genomes]
rs66766214	0.81[EUR][1000 genomes]
rs67264423	0.81[EUR][1000 genomes]
rs7003288	0.89[EUR][1000 genomes]
rs71526944	0.81[EUR][1000 genomes]
rs71526948	0.87[EUR][1000 genomes]
rs71526949	0.83[EUR][1000 genomes]
rs71526953	0.81[EUR][1000 genomes]
rs73291155	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73692426	0.86[EUR][1000 genomes]
rs7819570	0.81[EUR][1000 genomes]
rs7820710	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7833159	0.82[EUR][1000 genomes]
rs7833613	0.82[EUR][1000 genomes]
rs7838490	0.83[EUR][1000 genomes]
rs821101	0.90[ASN][1000 genomes]
rs821112	0.94[ASN][1000 genomes]
rs821113	0.94[ASN][1000 genomes]
rs821115	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89476600-89483800	Weak transcription	Pancreas	Pancrea
2	chr8:89478400-89486400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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