Variant report

Variant	rs1094196
Chromosome Location	chr8:89470963-89470964
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10100170	0.83[ASN][1000 genomes]
rs1012116	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10504840	1.00[ASN][1000 genomes]
rs10504859	0.86[EUR][1000 genomes]
rs1094195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1094198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774961	0.92[ASN][1000 genomes]
rs13258321	1.00[ASN][1000 genomes]
rs13261175	0.83[ASN][1000 genomes]
rs13262875	0.83[ASN][1000 genomes]
rs13271448	1.00[ASN][1000 genomes]
rs13271846	0.86[EUR][1000 genomes]
rs13279451	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394511	0.83[ASN][1000 genomes]
rs1504798	1.00[ASN][1000 genomes]
rs1504799	1.00[ASN][1000 genomes]
rs1504801	0.83[ASN][1000 genomes]
rs16882957	1.00[ASN][1000 genomes]
rs16884251	0.86[EUR][1000 genomes]
rs16884273	0.86[EUR][1000 genomes]
rs16884286	0.84[EUR][1000 genomes]
rs16884288	0.86[EUR][1000 genomes]
rs1700143	0.99[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1825876	1.00[ASN][1000 genomes]
rs1910730	0.83[ASN][1000 genomes]
rs2129780	0.83[EUR][1000 genomes]
rs34051963	0.83[ASN][1000 genomes]
rs34366260	0.84[EUR][1000 genomes]
rs34583542	1.00[ASN][1000 genomes]
rs34846572	0.86[EUR][1000 genomes]
rs35367857	0.85[EUR][1000 genomes]
rs35660410	0.90[ASN][1000 genomes]
rs35768850	0.84[EUR][1000 genomes]
rs35795205	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4295707	0.86[EUR][1000 genomes]
rs4369037	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4425798	0.86[EUR][1000 genomes]
rs4461943	0.83[ASN][1000 genomes]
rs4497011	0.83[ASN][1000 genomes]
rs4604492	0.92[ASN][1000 genomes]
rs4961095	0.90[ASN][1000 genomes]
rs56231945	0.83[ASN][1000 genomes]
rs58035549	0.85[EUR][1000 genomes]
rs58255283	0.83[ASN][1000 genomes]
rs58418586	0.83[ASN][1000 genomes]
rs58644813	0.83[ASN][1000 genomes]
rs6469364	0.83[ASN][1000 genomes]
rs6469372	0.83[ASN][1000 genomes]
rs67312178	0.83[ASN][1000 genomes]
rs6984041	0.83[ASN][1000 genomes]
rs6989402	0.83[ASN][1000 genomes]
rs6994283	0.83[ASN][1000 genomes]
rs7002751	0.83[ASN][1000 genomes]
rs7003288	0.86[EUR][1000 genomes]
rs7003388	0.83[ASN][1000 genomes]
rs7004601	0.83[ASN][1000 genomes]
rs7006944	0.83[ASN][1000 genomes]
rs71526948	0.84[EUR][1000 genomes]
rs73291155	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692426	0.83[EUR][1000 genomes]
rs7820710	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823223	0.83[ASN][1000 genomes]
rs821101	0.96[ASN][1000 genomes]
rs821112	1.00[ASN][1000 genomes]
rs821113	1.00[ASN][1000 genomes]
rs821115	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89468800-89471000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:89470200-89472000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr8:89470200-89472600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr8:89470400-89471600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:89470800-89471000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr8:89470800-89471600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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