Variant report

Variant	rs10505017
Chromosome Location	chr8:103027251-103027252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103025621..103028560-chr8:103033345..103035115,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10089091	1.00[CEU][hapmap]
rs10090732	1.00[CEU][hapmap]
rs10091084	0.81[EUR][1000 genomes]
rs10102923	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105502	0.91[CEU][hapmap]
rs1269711	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1269712	0.88[EUR][1000 genomes]
rs16868893	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992330	0.91[CEU][hapmap];0.81[TSI][hapmap]
rs2023268	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2023269	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2387331	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs28379664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28680363	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4734049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4734050	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4734052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734607	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs4734609	1.00[CEU][hapmap]
rs55837041	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59321812	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60389438	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6468809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72679088	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814225	0.81[EUR][1000 genomes]
rs7814951	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs7818772	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7837198	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs9297317	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs9656850	0.91[EUR][1000 genomes]
rs984928	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs9886578	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103010200-103028400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:103010800-103028400	Weak transcription	Aorta	Aorta
3	chr8:103022400-103028600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:103023000-103028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:103023200-103027800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:103024800-103028200	Weak transcription	Pancreas	Pancrea
7	chr8:103024800-103028400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:103025000-103027800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:103025800-103028200	Weak transcription	Ovary	ovary
10	chr8:103026000-103028000	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:103026000-103028400	Weak transcription	Primary T cells from cord blood	blood
12	chr8:103026200-103028600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:103026400-103035200	Weak transcription	Left Ventricle	heart
14	chr8:103026400-103038800	Weak transcription	Right Ventricle	heart
15	chr8:103026600-103028400	Weak transcription	Fetal Heart	heart
16	chr8:103027000-103028800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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